Fix mount-farm (#10)

* Update mount-farm script * Update poststart.sh
cellgeni · Mar 2, 2020 · d1addd1 · d1addd1
1 parent 7afcfe0
commit d1addd1
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diff --git a/Dockerfile b/Dockerfile
@@ -216,7 +216,8 @@ COPY files/data /home/jovyan/data
 COPY files/notebooks /home/jovyan/notebooks
 
 # copy mount script
-COPY mount-farm.sh /
+COPY mount-farm /usr/local/bin/mount-farm
+RUN chmod +x /usr/local/bin/mount-farm
 
 # copy poststart script
 COPY poststart.sh /
diff --git a/mount-farm b/mount-farm
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-FARM_LOGIN=farm5-login
+FARM_LOGIN=farm5-login.internal.sanger.ac.uk
 
 MOUNTED_DIRS=$(mount | grep sshfs | awk '{print $3}' | grep -E "^(/nfs|/lustre|/warehouse)$")
 if [[ ! -z ${MOUNTED_DIRS} ]];

diff --git a/poststart.sh b/poststart.sh
@@ -19,10 +19,6 @@ sudo mkdir -p /nfs
 sudo mkdir -p /lustre
 sudo mkdir -p /warehouse
 
-# copy mount-farm so its avaiable on the user's path
-sudo chmod +x /mount-farm.sh
-sudo cp /mount-farm.sh /usr/local/bin/mount-farm
-
 # start docker service
 sudo service docker start