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16 followers · 12 following
  • University of California, Davis
  • Davis, CA

Achievements

Achievement: QuickdrawAchievement: Pair Extraordinairex2Achievement: Pull Sharkx2Achievement: YOLO

Achievements

Achievement: QuickdrawAchievement: Pair Extraordinairex2Achievement: Pull Sharkx2Achievement: YOLO

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ccbaumler/README.md

About

Focused on bioinformatically deriving biomedical-relevant answers from public data in the population health field. I find some purpose in helping and mentoring others. Broadly, I aim to eloquently teach topics that are esoteric and under-taught.

Current projects

  1. Discovery and re-discovery of genomic and metabolomic biomarkers in case verse control studies.
  2. Teaching inclusive, equitable, and sustainable practices in scholarly knowledge management

Github Statistics

My latest open-source contributions:

  1. ❗ Opened issue #1 in d-pug/2025_command_line
  2. 💪 Opened PR #31 in dib-lab/sourmash_plugin_pangenomics
  3. 🔒 Closed issue #28 in dib-lab/sourmash_plugin_pangenomics
  4. 🎉 Merged PR #29 in dib-lab/sourmash_plugin_pangenomics
  5. 🎉 Merged PR #30 in dib-lab/sourmash_plugin_pangenomics
Colton's dynamically generated GitHub stats Colton's dynamically generated GitHub stats

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  1. dib-lab/2023-clean-gtdb dib-lab/2023-clean-gtdb Public

    An experimental snakemake workflow repository to remove suppressed or replaced genomes from sourmash workflows

    Python

  2. dib-lab/2018-ncbi-lineages dib-lab/2018-ncbi-lineages Public

    Extract lineage CSVs from NCBI for use with sourmash lca.

    Python 29 6

  3. dib-lab/portable-snakemake-workflows dib-lab/portable-snakemake-workflows Public

    A small, fast, robust workflows using snakemake!

    Python 1 1

  4. lab-notes-template lab-notes-template Public

    A simple, easy lab notebook website

    1 5