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V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Jupyter Notebook 135 46
A method for embedding and clustering of tumor mutation trees.
An interactive graphical user interface for visualizing mutation tree cohorts.
Cloudification of V-Pipe: Frontend for the Biohackathon 2024
Wastewater-derived Respiratory Syncytial Virus data analysis
BSSE COVID-19 sequencing of test swab samples
WISE Loculus with V-Pipe – Infra for start-to-end viral wastewater analysis.
Wrangling short-read sequencing data for import into SILO
VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data
Tree inference from mitochondrial mutations
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