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Workflow that creates all the BAM files for the cfDNA assay based FASTQ file at MSK

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carmelinacharalambous/nucleo

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description
Workflow that creates all the bam files for the MSK-ACCESS fastq file

Nucleo: FASTQ to MSK-ACCESS BAM's Generation

test_nucleo Updates Python 3

Features

Given a pair-end fastq file generate collapsed fastq and standard, unfiltered, duplex and simplex Binary Alignment File

Installation

Clone the repository:

git clone --depth 50 https://github.com/msk-access/nucleo.git

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Workflow that creates all the BAM files for the cfDNA assay based FASTQ file at MSK

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