v0.6.1

GeneFinder v0.6.1

Diff since v0.6.0

Merged pull requests:

• Rename ORF to ORFI (#36) (@camilogarciabotero)

v0.6.0

GeneFinder v0.6.0

Diff since v0.5.0

v0.5.0

GeneFinder v0.5.0

Diff since v0.4.0

Merged pull requests:

• Moving ORF as an AbstractGenomicInterval{T} (#34) (@camilogarciabotero)
• Refactor docs and improve chapter readability (#35) (@camilogarciabotero)

Closed issues:

• Using score to filter what getorfs delivers (#33)

v0.4.0

GeneFinder v0.4.0

Diff since v0.3.0

Merged pull requests:

• Bump julia-actions/setup-julia from 1 to 2 (#29) (@dependabot[bot])
• Improve interface for further methods (#32) (@camilogarciabotero)

Closed issues:

• The iscoding should be more generic. (#30)

v0.3.0

GeneFinder v0.3.0

Diff since v0.2.0

Merged pull requests:

• Scoring field in the ORF structs (#26) (@camilogarciabotero)
• Decoupling findorfs method (#27) (@camilogarciabotero)
• Add a new ORF finder method algorithm using BioMarkovChains.jl (#28) (@camilogarciabotero)

v0.2.0

GeneFinder v0.2.0

Diff since v0.1.0

Breaking changes

• A more stable ORF type that asserts for incorrect ORFs.
• Extended Base.getindex method to better handle ORF enabling: seq[orf] regardless of the ORF strand.
• The write_* API is much more stable and its been rewriten to handle IOStreams and IOBuffers as well.
• The new record_orfs_fna and record_orfs_faa methods intearact with the FASTX interface.
• Codebase has been reduced. Direct String manipulation is not enabled for findorfs and get_* methods.
• Docstrings have been updated following method updates.
• Better tests and now Aqua.jl is used for several tests as well.

Merged pull requests:

• Refactor ORF main type, update entire writting API and other general changes (#23) (@camilogarciabotero)

v0.1.0

GeneFinder v0.1.0

Diff since v0.0.23

Merged pull requests:

• Bump actions/checkout from 3 to 4 (#22) (@dependabot[bot])

v0.0.23

GeneFinder v0.0.23

Diff since v0.0.22

Merged pull requests:

• General clean up (#21) (@camilogarciabotero)

v0.0.22

GeneFinder v0.0.22

Diff since v0.0.21

v0.0.21

GeneFinder v0.0.21

Diff since v0.0.20

Merged pull requests:

• Adding frame information to ORFs (#20) (@camilogarciabotero)