bump viral-assemble

Author: dpark01

pipes/WDL/tasks/tasks_assembly.wdl

@@ -15,7 +15,7 @@ task assemble {
       String   sample_name = basename(basename(reads_unmapped_bam, ".bam"), ".taxfilt")
 
       Int?     machine_mem_gb
-      String   docker = "quay.io/broadinstitute/viral-assemble:2.3.6.0"
+      String   docker = "quay.io/broadinstitute/viral-assemble:2.3.6.1"
     }
     parameter_meta{
       reads_unmapped_bam: {
@@ -115,7 +115,7 @@ task select_references {
     Int?          skani_s
     Int?          skani_c
 
-    String        docker = "quay.io/broadinstitute/viral-assemble:2.3.6.0"
+    String        docker = "quay.io/broadinstitute/viral-assemble:2.3.6.1"
     Int           machine_mem_gb = 4
     Int           cpu = 2
     Int           disk_size = 100
@@ -206,7 +206,7 @@ task scaffold {
       Float?       scaffold_min_pct_contig_aligned
 
       Int?         machine_mem_gb
-      String       docker="quay.io/broadinstitute/viral-assemble:2.3.6.0"
+      String       docker="quay.io/broadinstitute/viral-assemble:2.3.6.1"
 
       # do this in multiple steps in case the input doesn't actually have "assembly1-x" in the name
       String       sample_name = basename(basename(contigs_fasta, ".fasta"), ".assembly1-spades")
@@ -720,7 +720,7 @@ task refine_assembly_with_aligned_reads {
       Int      min_coverage = 3
 
       Int      machine_mem_gb = 15
-      String   docker = "quay.io/broadinstitute/viral-assemble:2.3.6.0"
+      String   docker = "quay.io/broadinstitute/viral-assemble:2.3.6.1"
     }
 
     Int disk_size = 375
@@ -845,7 +845,7 @@ task refine_2x_and_plot {
       String? plot_coverage_novoalign_options = "-r Random -l 40 -g 40 -x 20 -t 100 -k"
 
       Int?    machine_mem_gb
-      String  docker = "quay.io/broadinstitute/viral-assemble:2.3.6.0"
+      String  docker = "quay.io/broadinstitute/viral-assemble:2.3.6.1"
 
       # do this in two steps in case the input doesn't actually have "cleaned" in the name
       String  sample_name = basename(basename(reads_unmapped_bam, ".bam"), ".cleaned")

pipes/WDL/tasks/tasks_megablast.wdl

@@ -15,7 +15,7 @@ task trim_rmdup_subsamp {
         Int cpu            = 16
         Int disk_size_gb   = 100 
 
-        String docker      = "quay.io/broadinstitute/viral-assemble:2.3.6.0"
+        String docker      = "quay.io/broadinstitute/viral-assemble:2.3.6.1"
     }
 
     parameter_meta {

pipes/WDL/tasks/tasks_reports.wdl

@@ -698,7 +698,7 @@ task compare_two_genomes {
     File   genome_two
     String out_basename
 
-    String docker = "quay.io/broadinstitute/viral-assemble:2.3.6.0"
+    String docker = "quay.io/broadinstitute/viral-assemble:2.3.6.1"
   }
 
   Int disk_size = 50