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Converted JSON content into markdown
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actions-user committed Sep 6, 2024
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2 changes: 1 addition & 1 deletion docs/gene_database/readme.md
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Expand Up @@ -65,6 +65,6 @@ Requests for additional identifier mapping files can be posted [in this tracker]
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/1.0-RELEASE" },"name": "complexes-2023-02-09.bridge","description": "BridgeDb identifier mapping file for Complexes (species independent)","@id": "https://bridgedb.github.io/data/gene_database/10.5281/zenodo.7625357/complexes-2023-02-09.bridge","identifier": "10.5281/zenodo.7625357/complexes-2023-02-09.bridge","license": "http://creativecommons.org/publicdomain/zero/1.0/","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, type","url": "https://doi.org/10.5281/zenodo.7625357","distribution": [ { "@type": "DataDownload", "name": "complexes-2023-02-09.bridge", "contentURL": "https://zenodo.org/record/7625357/files/complexes-2023-02-09.bridge?download=1" } ],"isAccessibleForFree": true}</script> Complexes | [complexes-2023-02-09.bridge](https://zenodo.org/record/7625357/files/complexes-2023-02-09.bridge?download=1) (doi:[10.5281/zenodo.7625357](https://doi.org/10.5281/zenodo.7625357)) | | 12.5 MB| [CC0](http://creativecommons.org/publicdomain/zero/1.0/) | 2023-02-09 | <a href="https://github.com/bridgedb/BridgeDbWebservice">BridgeDb Webservice</a> |
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/1.0-RELEASE" },"name": "genes_20230506.bridge","description": "BridgeDb identifier mapping file for Genes (species independent)","@id": "https://bridgedb.github.io/data/gene_database/10.5281/zenodo.7902769/genes_20230506.bridge","identifier": "10.5281/zenodo.7902769/genes_20230506.bridge","license": "http://creativecommons.org/publicdomain/zero/1.0/","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, type","url": "https://doi.org/10.5281/zenodo.7902769","distribution": [ { "@type": "DataDownload", "name": "genes_20230506.bridge", "contentURL": "https://zenodo.org/record/7902769/files/genes_20230506.bridge?download=1" } ],"isAccessibleForFree": true}</script> Genes | [genes_20230506.bridge](https://zenodo.org/record/7902769/files/genes_20230506.bridge?download=1) (doi:[10.5281/zenodo.7902769](https://doi.org/10.5281/zenodo.7902769)) | | 95.1 MB| [CC0](http://creativecommons.org/publicdomain/zero/1.0/) | 2023-05-06 | <a href="https://github.com/bridgedb/BridgeDbWebservice">BridgeDb Webservice</a> |
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/1.0-RELEASE" },"name": "interactions20210109.bridge","description": "BridgeDb identifier mapping file for Interactions (species independent)","@id": "https://bridgedb.github.io/data/gene_database/10.6084/m9.figshare.13551176/interactions20210109.bridge","identifier": "10.6084/m9.figshare.13551176/interactions20210109.bridge","license": "http://creativecommons.org/publicdomain/zero/1.0/","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, type","url": "https://doi.org/10.6084/m9.figshare.13551176","distribution": [ { "@type": "DataDownload", "name": "interactions20210109.bridge", "contentURL": "https://ndownloader.figshare.com/files/26003138" } ],"isAccessibleForFree": true}</script> Interactions | [interactions20210109.bridge](https://ndownloader.figshare.com/files/26003138) (doi:[10.6084/m9.figshare.13551176](https://doi.org/10.6084/m9.figshare.13551176)) | | 17.13 MB| [CC0](http://creativecommons.org/publicdomain/zero/1.0/) | 2021-01-09 | <a href="https://github.com/bridgedb/BridgeDbWebservice">BridgeDb Webservice</a> |
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/1.0-RELEASE" },"name": "metabolites_20220707.bridge","description": "BridgeDb identifier mapping file for Metabolites (species independent)","@id": "https://bridgedb.github.io/data/gene_database/10.6084/m9.figshare.20260911/metabolites_20220707.bridge","identifier": "10.6084/m9.figshare.20260911/metabolites_20220707.bridge","license": "http://creativecommons.org/publicdomain/zero/1.0/","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, type","url": "https://doi.org/10.6084/m9.figshare.20260911","distribution": [ { "@type": "DataDownload", "name": "metabolites_20220707.bridge", "contentURL": "https://figshare.com/ndownloader/files/36197283" } ],"isAccessibleForFree": true}</script> Metabolites | [metabolites_20220707.bridge](https://figshare.com/ndownloader/files/36197283) (doi:[10.6084/m9.figshare.20260911](https://doi.org/10.6084/m9.figshare.20260911)) | | 2.59 GB| [CC0](http://creativecommons.org/publicdomain/zero/1.0/) | 2022-07-07 | <a href="https://github.com/PathVisio/pathvisio/releases/tag/v3.3.0">PathVisio 3.3</a> <a href="https://github.com/bridgedb/BridgeDbWebservice">BridgeDb Webservice</a> |
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/1.0-RELEASE" },"name": "metabolites_20240903.bridge","description": "BridgeDb identifier mapping file for Metabolites (species independent)","@id": "https://bridgedb.github.io/data/gene_database/10.6084/m9.figshare.26931712.v1/metabolites_20240903.bridge","identifier": "10.6084/m9.figshare.26931712.v1/metabolites_20240903.bridge","license": "http://creativecommons.org/publicdomain/zero/1.0/","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, type","url": "https://doi.org/10.6084/m9.figshare.26931712.v1","distribution": [ { "@type": "DataDownload", "name": "metabolites_20240903.bridge", "contentURL": "https://figshare.com/ndownloader/files/48989563" } ],"isAccessibleForFree": true}</script> Metabolites | [metabolites_20240903.bridge](https://figshare.com/ndownloader/files/48989563) (doi:[10.6084/m9.figshare.26931712.v1](https://doi.org/10.6084/m9.figshare.26931712.v1)) | [QC](https://figshare.com/ndownloader/files/48989554)| 2.84 GB| [CC0](http://creativecommons.org/publicdomain/zero/1.0/) | 2024-09-03 | <a href="https://github.com/PathVisio/pathvisio/releases/tag/v3.3.0">PathVisio 3.3</a> <a href="https://github.com/bridgedb/BridgeDbWebservice">BridgeDb Webservice</a> |
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/1.0-RELEASE" },"name": "pathways_20211211.bridge","description": "BridgeDb identifier mapping file for Pathways (species independent)","@id": "https://bridgedb.github.io/data/gene_database/10.5281/zenodo.5773822/pathways_20211211.bridge","identifier": "10.5281/zenodo.5773822/pathways_20211211.bridge","license": "http://creativecommons.org/publicdomain/zero/1.0/","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, type","url": "https://doi.org/10.5281/zenodo.5773822","distribution": [ { "@type": "DataDownload", "name": "pathways_20211211.bridge", "contentURL": "https://zenodo.org/record/5773822/files/pathways_20211211.bridge?download=1" } ],"isAccessibleForFree": true}</script> Pathways | [pathways_20211211.bridge](https://zenodo.org/record/5773822/files/pathways_20211211.bridge?download=1) (doi:[10.5281/zenodo.5773822](https://doi.org/10.5281/zenodo.5773822)) | | 2.4 MB| [CC0](http://creativecommons.org/publicdomain/zero/1.0/) | 2021-12-11 | <a href="https://github.com/bridgedb/BridgeDbWebservice">BridgeDb Webservice</a> |
| <script type="application/ld+json">{"@context": "https://schema.org/","@type": "Dataset","http://purl.org/dc/terms/conformsTo": { "@type": "CreativeWork", "@id": "https://bioschemas.org/profiles/Dataset/1.0-RELEASE" },"name": "publications_20230428.bridge","description": "BridgeDb identifier mapping file for Publications (species independent)","@id": "https://bridgedb.github.io/data/gene_database/10.6084/m9.figshare.22720564.v1/publications_20230428.bridge","identifier": "10.6084/m9.figshare.22720564.v1/publications_20230428.bridge","license": "http://creativecommons.org/publicdomain/zero/1.0/","keywords": "BridgeDb, mapping file, identifier, ELIXIR RIR, type","url": "https://doi.org/10.6084/m9.figshare.22720564.v1","distribution": [ { "@type": "DataDownload", "name": "publications_20230428.bridge", "contentURL": "https://figshare.com/ndownloader/files/40356739" } ],"isAccessibleForFree": true}</script> Publications | [publications_20230428.bridge](https://figshare.com/ndownloader/files/40356739) (doi:[10.6084/m9.figshare.22720564.v1](https://doi.org/10.6084/m9.figshare.22720564.v1)) | [QC](https://figshare.com/ndownloader/files/40356736)| 25.7 MB| [CC0](http://creativecommons.org/publicdomain/zero/1.0/) | 2023-04-28 | <a href="https://github.com/bridgedb/BridgeDbWebservice">BridgeDb Webservice</a> |
11 changes: 6 additions & 5 deletions docs/other.json
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},
{
"type": "Metabolites",
"file": "metabolites_20220707.bridge",
"downloadURL": "https://figshare.com/ndownloader/files/36197283",
"doi": "10.6084/m9.figshare.20260911",
"file": "metabolites_20240903.bridge",
"downloadURL": "https://figshare.com/ndownloader/files/48989563",
"doi": "10.6084/m9.figshare.26931712.v1",
"license": "http://creativecommons.org/publicdomain/zero/1.0/",
"date": "2022-07-07",
"size": "2.59 GB",
"QCreport": "https://figshare.com/ndownloader/files/48989554",
"date": "2024-09-03",
"size": "2.84 GB",
"tested": [ "PV33" , "WS" ]
},
{
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2 changes: 1 addition & 1 deletion docs/other.json.config
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* complexes-2023-02-09.bridge
* genes_20230506.bridge
* interactions20210109.bridge
* metabolites_20220707.bridge
* metabolites_20240903.bridge
* pathways_20211211.bridge
* publications_20230428.bridge

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