brewsci/bio/bali-phy 4.0-beta17 did not build

brewsci/bio/bali-phy 4.0-beta17 did not build

vtable for boost::program_options::typed_value<unsigned long, char> in cmd_line.cc.o vtable for boost::program_options::typed_value<bool, char> in cmd_line.cc.o vtable for boost::program_options::typed_value<double, char> in cmd_line.cc.o ... ld: symbol(s) not found for architecture arm64 collect2: error: ld returned 1 exit status [305/428] Compiling C++ object src/bali-subsample.p/tools_subsample.cc.o [306/428] Compiling C++ object src/path-graph.p/tools_path-graph.cc.o ninja: build stopped: subcommand failed. ==> Formula Tap: brewsci/bio Path: /opt/homebrew/Library/Taps/brewsci/homebrew-bio/Formula/bali-phy.rb ==> Configuration HOMEBREW_VERSION: 4.4.17-27-gfa40d2f ORIGIN: https://github.com/Homebrew/brew HEAD: fa40d2f2fd13b3df52a63fd26a40d120d19dd00c Last commit: 65 minutes ago Branch: master Core tap HEAD: 1b6160091409bcd85afdfd9227b95eac8dc98d06 Core tap last commit: 3 days ago Core tap JSON: 22 Jan 23:24 UTC Core cask tap HEAD: 6644020bcefb1cb3e206cf4562ebdc8895066e4c Core cask tap last commit: 3 days ago Core cask tap JSON: 22 Jan 23:24 UTC HOMEBREW_PREFIX: /opt/homebrew HOMEBREW_BOOTSNAP: set HOMEBREW_CACHE: /Users/runner/Library/Caches/Homebrew HOMEBREW_CASK_OPTS: ["--no-quarantine"] HOMEBREW_COLOR: set HOMEBREW_CURL_PATH: /usr/bin/curl HOMEBREW_FAIL_LOG_LINES: 150 HOMEBREW_FORCE_VENDOR_RUBY: set HOMEBREW_GITHUB_API_TOKEN: set HOMEBREW_GIT_EMAIL: [email protected] HOMEBREW_GIT_NAME: BrewTestBot HOMEBREW_GIT_PATH: /usr/bin/git HOMEBREW_LOGS: /Users/runner/work/homebrew-bio/homebrew-bio/logs HOMEBREW_MAKE_JOBS: 3 HOMEBREW_NO_ANALYTICS: set HOMEBREW_NO_AUTO_UPDATE: set HOMEBREW_NO_EMOJI: set HOMEBREW_NO_ENV_HINTS: set HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK: set HOMEBREW_NO_INSTALL_CLEANUP: set HOMEBREW_SORBET_RUNTIME: set Homebrew Ruby: 3.3.7 => /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.3.7/bin/ruby CPU: 3-core 64-bit dunno Clang: 15.0.0 build 1500 Git: 2.39.3 => /usr/bin/git Curl: 8.7.1 => /usr/bin/curl macOS: 14.7.2-arm64 CLT: 16.2.0.0.1.1733547573 Xcode: 15.4 => /Applications/Xcode_15.4.app/Contents/Developer Rosetta 2: false ==> ENV HOMEBREW_CC: gcc-14 HOMEBREW_CXX: g++-14 MAKEFLAGS: -j3 CMAKE_PREFIX_PATH: /opt/homebrew/opt/icu4c@76:/opt/homebrew/opt/readline:/opt/homebrew/opt/sqlite:/opt/homebrew CMAKE_INCLUDE_PATH: /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers CMAKE_LIBRARY_PATH: /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries CMAKE_FRAMEWORK_PATH: /opt/homebrew/opt/[email protected]/Frameworks PKG_CONFIG_PATH: /opt/homebrew/opt/pkgconf/lib/pkgconfig:/opt/homebrew/opt/icu4c@76/lib/pkgconfig:/opt/homebrew/opt/xz/lib/pkgconfig:/opt/homebrew/opt/lz4/lib/pkgconfig:/opt/homebrew/opt/zstd/lib/pkgconfig:/opt/homebrew/opt/libpng/lib/pkgconfig:/opt/homebrew/opt/freetype/lib/pkgconfig:/opt/homebrew/opt/fontconfig/lib/pkgconfig:/opt/homebrew/opt/pcre2/lib/pkgconfig:/opt/homebrew/opt/mpdecimal/lib/pkgconfig:/opt/homebrew/opt/openssl@3/lib/pkgconfig:/opt/homebrew/opt/readline/lib/pkgconfig:/opt/homebrew/opt/sqlite/lib/pkgconfig:/opt/homebrew/opt/[email protected]/lib/pkgconfig:/opt/homebrew/opt/glib/lib/pkgconfig:/opt/homebrew/opt/libxau/lib/pkgconfig:/opt/homebrew/opt/libxdmcp/lib/pkgconfig:/opt/homebrew/opt/libxcb/lib/pkgconfig:/opt/homebrew/opt/libx11/lib/pkgconfig:/opt/homebrew/opt/libxext/lib/pkgconfig:/opt/homebrew/opt/libxrender/lib/pkgconfig:/opt/homebrew/opt/lzo/lib/pkgconfig:/opt/homebrew/opt/pixman/lib/pkgconfig:/opt/homebrew/opt/cairo/lib/pkgconfig:/opt/homebrew/opt/gmp/lib/pkgconfig:/opt/homebrew/opt/isl/lib/pkgconfig:/opt/homebrew/opt/mpfr/lib/pkgconfig:/opt/homebrew/opt/eigen/share/pkgconfig:/opt/homebrew/opt/xorgproto/share/pkgconfig PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/opt/homebrew/Library/Homebrew/os/mac/pkgconfig/14 HOMEBREW_MAKE_JOBS: 3 HOMEBREW_GIT: /usr/bin/git HOMEBREW_SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk ACLOCAL_PATH: /opt/homebrew/share/aclocal PATH: /opt/homebr

install failed

Process completed with exit code 1.

brewsci/bio/bali-phy 4.0-beta17 did not build

vtable for boost::program_options::typed_value<unsigned long, char> in cmd_line.cc.o vtable for boost::program_options::typed_value<bool, char> in cmd_line.cc.o vtable for boost::program_options::typed_value<double, char> in cmd_line.cc.o ... ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status [304/428] Compiling C++ object src/alignment-smc.p/tools_alignment-smc.cc.o [305/428] Compiling C++ object src/bali-subsample.p/tools_subsample.cc.o [306/428] Compiling C++ object src/path-graph.p/tools_path-graph.cc.o ninja: build stopped: subcommand failed. ==> Formula Tap: brewsci/bio Path: /usr/local/Homebrew/Library/Taps/brewsci/homebrew-bio/Formula/bali-phy.rb ==> Configuration HOMEBREW_VERSION: 4.4.17-27-gfa40d2f ORIGIN: https://github.com/Homebrew/brew HEAD: fa40d2f2fd13b3df52a63fd26a40d120d19dd00c Last commit: 74 minutes ago Branch: master Core tap HEAD: b2c2969234e0953a539026bc3064d273b98c54e6 Core tap last commit: 3 days ago Core tap JSON: 22 Jan 23:24 UTC Core cask tap HEAD: d04b69543bf5c64afab32091536ec2f6d569ce80 Core cask tap last commit: 3 days ago Core cask tap JSON: 22 Jan 23:24 UTC HOMEBREW_PREFIX: /usr/local HOMEBREW_BOOTSNAP: set HOMEBREW_CACHE: /Users/runner/Library/Caches/Homebrew HOMEBREW_CASK_OPTS: ["--no-quarantine"] HOMEBREW_COLOR: set HOMEBREW_CURL_PATH: /usr/bin/curl HOMEBREW_FAIL_LOG_LINES: 150 HOMEBREW_FORCE_VENDOR_RUBY: set HOMEBREW_GITHUB_API_TOKEN: set HOMEBREW_GIT_EMAIL: [email protected] HOMEBREW_GIT_NAME: BrewTestBot HOMEBREW_GIT_PATH: /usr/bin/git HOMEBREW_LOGS: /Users/runner/work/homebrew-bio/homebrew-bio/logs HOMEBREW_MAKE_JOBS: 4 HOMEBREW_NO_ANALYTICS: set HOMEBREW_NO_AUTO_UPDATE: set HOMEBREW_NO_EMOJI: set HOMEBREW_NO_ENV_HINTS: set HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK: set HOMEBREW_NO_INSTALL_CLEANUP: set HOMEBREW_SORBET_RUNTIME: set Homebrew Ruby: 3.3.7 => /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/3.3.7/bin/ruby CPU: quad-core 64-bit ivybridge Clang: 15.0.0 build 1500 Git: 2.39.3 => /usr/bin/git Curl: 8.7.1 => /usr/bin/curl macOS: 13.7.2-x86_64 CLT: 14.3.1.0.1.1683849156 Xcode: 15.2 => /Applications/Xcode_15.2.app/Contents/Developer ==> ENV HOMEBREW_CC: gcc-14 HOMEBREW_CXX: g++-14 MAKEFLAGS: -j4 CMAKE_PREFIX_PATH: /usr/local/opt/icu4c@76:/usr/local/opt/readline:/usr/local/opt/sqlite:/usr/local CMAKE_INCLUDE_PATH: /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers CMAKE_LIBRARY_PATH: /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries CMAKE_FRAMEWORK_PATH: /usr/local/opt/[email protected]/Frameworks PKG_CONFIG_PATH: /usr/local/opt/pkgconf/lib/pkgconfig:/usr/local/opt/icu4c@76/lib/pkgconfig:/usr/local/opt/xz/lib/pkgconfig:/usr/local/opt/lz4/lib/pkgconfig:/usr/local/opt/zstd/lib/pkgconfig:/usr/local/opt/libpng/lib/pkgconfig:/usr/local/opt/freetype/lib/pkgconfig:/usr/local/opt/fontconfig/lib/pkgconfig:/usr/local/opt/pcre2/lib/pkgconfig:/usr/local/opt/mpdecimal/lib/pkgconfig:/usr/local/opt/openssl@3/lib/pkgconfig:/usr/local/opt/readline/lib/pkgconfig:/usr/local/opt/sqlite/lib/pkgconfig:/usr/local/opt/[email protected]/lib/pkgconfig:/usr/local/opt/glib/lib/pkgconfig:/usr/local/opt/libxau/lib/pkgconfig:/usr/local/opt/libxdmcp/lib/pkgconfig:/usr/local/opt/libxcb/lib/pkgconfig:/usr/local/opt/libx11/lib/pkgconfig:/usr/local/opt/libxext/lib/pkgconfig:/usr/local/opt/libxrender/lib/pkgconfig:/usr/local/opt/lzo/lib/pkgconfig:/usr/local/opt/pixman/lib/pkgconfig:/usr/local/opt/cairo/lib/pkgconfig:/usr/local/opt/gmp/lib/pkgconfig:/usr/local/opt/isl/lib/pkgconfig:/usr/local/opt/mpfr/lib/pkgconfig:/usr/local/opt/eigen/share/pkgconfig:/usr/local/opt/xorgproto/share/pkgconfig PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/usr/local/Homebrew/Library/Homebrew/os/mac/pkgconfig/13 HOMEBREW_MAKE_JOBS: 4 HOMEBREW_GIT: /usr/bin/git HOMEBREW_SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk ACLOCAL_PATH: /usr/local/share/aclocal PATH: /usr/local/Homebrew/Library/Home

install failed

Process completed with exit code 1.

vtable for boost::program_options::typed_value<unsigned long, char> in cmd_line.cc.o vtable for boost::program_options::typed_value<bool, char> in cmd_line.cc.o vtable for boost::program_options::typed_value<double, char> in cmd_line.cc.o ... ld: symbol(s) not found for architecture arm64 collect2: error: ld returned 1 exit status [305/428] Compiling C++ object src/bali-subsample.p/tools_subsample.cc.o [306/428] Compiling C++ object src/path-graph.p/tools_path-graph.cc.o ninja: build stopped: subcommand failed. ==> Formula Tap: brewsci/bio Path: /opt/homebrew/Library/Taps/brewsci/homebrew-bio/Formula/bali-phy.rb ==> Configuration HOMEBREW_VERSION: 4.4.17-27-gfa40d2f ORIGIN: https://github.com/Homebrew/brew HEAD: fa40d2f2fd13b3df52a63fd26a40d120d19dd00c Last commit: 64 minutes ago Branch: master Core tap HEAD: 7be1b6945af3bab62202367c0aac1cbf4b1bc510 Core tap last commit: 10 days ago Core tap JSON: 22 Jan 23:24 UTC Core cask tap HEAD: 8896a5d44980b1080ea829a7706e66bbf3839659 Core cask tap last commit: 10 days ago Core cask tap JSON: 22 Jan 23:24 UTC HOMEBREW_PREFIX: /opt/homebrew HOMEBREW_CACHE: /Users/runner/Library/Caches/Homebrew HOMEBREW_CASK_OPTS: ["--no-quarantine"] HOMEBREW_COLOR: set HOMEBREW_CURL_PATH: /usr/bin/curl HOMEBREW_FAIL_LOG_LINES: 150 HOMEBREW_FORCE_VENDOR_RUBY: set HOMEBREW_GITHUB_API_TOKEN: set HOMEBREW_GIT_EMAIL: [email protected] HOMEBREW_GIT_NAME: BrewTestBot HOMEBREW_GIT_PATH: /usr/bin/git HOMEBREW_LOGS: /Users/runner/work/homebrew-bio/homebrew-bio/logs HOMEBREW_MAKE_JOBS: 3 HOMEBREW_NO_ANALYTICS: set HOMEBREW_NO_AUTO_UPDATE: set HOMEBREW_NO_EMOJI: set HOMEBREW_NO_ENV_HINTS: set HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK: set HOMEBREW_NO_INSTALL_CLEANUP: set HOMEBREW_SORBET_RUNTIME: set Homebrew Ruby: 3.3.7 => /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.3.7/bin/ruby CPU: 3-core 64-bit dunno Clang: 16.0.0 build 1600 Git: 2.39.5 => /usr/bin/git Curl: 8.7.1 => /usr/bin/curl macOS: 15.2-arm64 CLT: 16.2.0.0.1.1733547573 Xcode: 16.0 => /Applications/Xcode_16.app/Contents/Developer Rosetta 2: false ==> ENV HOMEBREW_CC: gcc-14 HOMEBREW_CXX: g++-14 MAKEFLAGS: -j3 CMAKE_PREFIX_PATH: /opt/homebrew/opt/icu4c@76:/opt/homebrew/opt/readline:/opt/homebrew/opt/sqlite:/opt/homebrew CMAKE_INCLUDE_PATH: /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers CMAKE_LIBRARY_PATH: /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries CMAKE_FRAMEWORK_PATH: /opt/homebrew/opt/[email protected]/Frameworks PKG_CONFIG_PATH: /opt/homebrew/opt/pkgconf/lib/pkgconfig:/opt/homebrew/opt/icu4c@76/lib/pkgconfig:/opt/homebrew/opt/xz/lib/pkgconfig:/opt/homebrew/opt/lz4/lib/pkgconfig:/opt/homebrew/opt/zstd/lib/pkgconfig:/opt/homebrew/opt/libpng/lib/pkgconfig:/opt/homebrew/opt/freetype/lib/pkgconfig:/opt/homebrew/opt/fontconfig/lib/pkgconfig:/opt/homebrew/opt/pcre2/lib/pkgconfig:/opt/homebrew/opt/mpdecimal/lib/pkgconfig:/opt/homebrew/opt/openssl@3/lib/pkgconfig:/opt/homebrew/opt/readline/lib/pkgconfig:/opt/homebrew/opt/sqlite/lib/pkgconfig:/opt/homebrew/opt/[email protected]/lib/pkgconfig:/opt/homebrew/opt/glib/lib/pkgconfig:/opt/homebrew/opt/libxau/lib/pkgconfig:/opt/homebrew/opt/libxdmcp/lib/pkgconfig:/opt/homebrew/opt/libxcb/lib/pkgconfig:/opt/homebrew/opt/libx11/lib/pkgconfig:/opt/homebrew/opt/libxext/lib/pkgconfig:/opt/homebrew/opt/libxrender/lib/pkgconfig:/opt/homebrew/opt/lzo/lib/pkgconfig:/opt/homebrew/opt/pixman/lib/pkgconfig:/opt/homebrew/opt/cairo/lib/pkgconfig:/opt/homebrew/opt/gmp/lib/pkgconfig:/opt/homebrew/opt/isl/lib/pkgconfig:/opt/homebrew/opt/mpfr/lib/pkgconfig:/opt/homebrew/opt/eigen/share/pkgconfig:/opt/homebrew/opt/xorgproto/share/pkgconfig PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/opt/homebrew/Library/Homebrew/os/mac/pkgconfig/15 HOMEBREW_MAKE_JOBS: 3 HOMEBREW_GIT: /usr/bin/git HOMEBREW_SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk ACLOCAL_PATH: /opt/homebrew/share/aclocal PATH: /opt/homebrew/Library/Homebrew/shims

install failed

No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.

No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.

No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.