fastani: support Sequoia #2185
build-bottles.yml
on: pull_request
Matrix: build-bottles
merge
3s
Annotations
1 error and 3 warnings
build-bottles (macos-15)
brewsci/bio/fastani 1.34 did not build
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`brew install --verbose --formula --build-bottle brewsci/bio/fastani` failed on macOS Sequoia (15) on Apple Silicon!:
Formula/fastani.rb#L20
/Applications/Xcode_16.app/Contents/Developer/usr/bin/make -f CMakeFiles/fastANI.dir/build.make CMakeFiles/fastANI.dir/build
[ 66%] Building CXX object CMakeFiles/fastANI.dir/src/cgi/main.cpp.o
[ 66%] Building CXX object CMakeFiles/fastANI.dir/src/cgi/core_genome_identity.cpp.o
/opt/homebrew/Library/Homebrew/shims/mac/super/clang++ -I/tmp/fastani-20241019-11830-8njmiy/FastANI-1.34/src -std=c++11 -O3 -DNDEBUG -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk "-Xclang -fopenmp" -MD -MT CMakeFiles/fastANI.dir/src/cgi/main.cpp.o -MF CMakeFiles/fastANI.dir/src/cgi/main.cpp.o.d -o CMakeFiles/fastANI.dir/src/cgi/main.cpp.o -c /tmp/fastani-20241019-11830-8njmiy/FastANI-1.34/src/cgi/main.cpp
/opt/homebrew/Library/Homebrew/shims/mac/super/clang++ -I/tmp/fastani-20241019-11830-8njmiy/FastANI-1.34/src -std=c++11 -O3 -DNDEBUG -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk "-Xclang -fopenmp" -MD -MT CMakeFiles/fastANI.dir/src/cgi/core_genome_identity.cpp.o -MF CMakeFiles/fastANI.dir/src/cgi/core_genome_identity.cpp.o.d -o CMakeFiles/fastANI.dir/src/cgi/core_genome_identity.cpp.o -c /tmp/fastani-20241019-11830-8njmiy/FastANI-1.34/src/cgi/core_genome_identity.cpp
clang++clang++: : error: unknown argument: '-Xclang -fopenmp'
error: unknown argument: '-Xclang -fopenmp'
make[2]: *** [CMakeFiles/fastANI.dir/src/cgi/core_genome_identity.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[2]: *** [CMakeFiles/fastANI.dir/src/cgi/main.cpp.o] Error 1
make[1]: *** [CMakeFiles/fastANI.dir/all] Error 2
make: *** [all] Error 2
==> Formula
Tap: brewsci/bio
Path: /opt/homebrew/Library/Taps/brewsci/homebrew-bio/Formula/fastani.rb
==> Configuration
HOMEBREW_VERSION: 4.4.1-62-g6f17b06
ORIGIN: https://github.com/Homebrew/brew
HEAD: 6f17b0644771e0a1d7c15ac72471dae2ef87314a
Last commit: 21 hours ago
Core tap HEAD: db9a843066d27d7217ab0e813b17a7f6c880af52
Core tap last commit: 5 days ago
Core tap JSON: 19 Oct 14:51 UTC
Core cask tap HEAD: c0fd9d20c432ea2470b6f46415cce46ced667348
Core cask tap last commit: 6 days ago
Core cask tap JSON: 19 Oct 14:51 UTC
HOMEBREW_PREFIX: /opt/homebrew
HOMEBREW_CACHE: /Users/runner/Library/Caches/Homebrew
HOMEBREW_CASK_OPTS: ["--no-quarantine"]
HOMEBREW_COLOR: set
HOMEBREW_CURL_PATH: /usr/bin/curl
HOMEBREW_FAIL_LOG_LINES: 150
HOMEBREW_FORCE_VENDOR_RUBY: set
HOMEBREW_GITHUB_API_TOKEN: set
HOMEBREW_GIT_EMAIL: [email protected]
HOMEBREW_GIT_NAME: BrewTestBot
HOMEBREW_GIT_PATH: /usr/bin/git
HOMEBREW_LOGS: /Users/runner/work/homebrew-bio/homebrew-bio/logs
HOMEBREW_MAKE_JOBS: 3
HOMEBREW_NO_ANALYTICS: set
HOMEBREW_NO_AUTO_UPDATE: set
HOMEBREW_NO_EMOJI: set
HOMEBREW_NO_ENV_HINTS: set
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK: set
HOMEBREW_NO_INSTALL_CLEANUP: set
HOMEBREW_SORBET_RUNTIME: set
Homebrew Ruby: 3.3.5 => /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.3.5/bin/ruby
CPU: 3-core 64-bit dunno
Clang: 16.0.0 build 1600
Git: 2.39.5 => /usr/bin/git
Curl: 8.7.1 => /usr/bin/curl
macOS: 15.0-arm64
CLT: 16.0.0.0.1.1724870825
Xcode: 16.0 => /Applications/Xcode_16.app/Contents/Developer
Rosetta 2: false
==> ENV
HOMEBREW_CC: clang
HOMEBREW_CXX: clang++
CXXFLAGS: -std=c++11
MAKEFLAGS: -j3
CMAKE_PREFIX_PATH: /opt/homebrew/opt/icu4c@75:/opt/homebrew/opt/libomp:/opt/homebrew
CMAKE_INCLUDE_PATH: /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers
CMAKE_LIBRARY_PATH: /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
PKG_CONFIG_PATH: /opt/homebrew/opt/icu4c@75/lib/pkgconfig:/opt/homebrew/opt/xz/lib/pkgconfig:/opt/homebrew/opt/lz4/lib/pkgconfig:/opt/homebrew/opt/zstd/lib/pkgconfig:/opt/homebrew/opt/gsl/lib/pkgconfig
PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/opt/homebrew/Library/Homebrew/os/mac/pkgconfig/15
HOMEBREW_MAKE_JOBS: 3
HOMEBREW_GIT: /usr/bin/git
HOMEBREW_SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk
ACLOCAL_PATH: /opt/homebrew/share/aclocal
PATH: /opt/homebrew/Library/Ho
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build-bottles (macos-15)
install failed
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build-bottles (macos-15)
No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.
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Artifacts
Produced during runtime
Name | Size | |
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all-bottles
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10.8 MB |
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bottles-macos-13
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3.58 MB |
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bottles-macos-14
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3.58 MB |
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bottles-ubuntu-latest
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3.59 MB |
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