BROKEN: try to update htslib #173
Workflow file for this run
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| name: Build | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| name: Run tests on Python ${{ matrix.python-version }} | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| python-version: [3.7, 3.8, 3.9, "3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libcurl4-openssl-dev | |
| pip install -r requirements.txt | |
| pip install pytest pytest-cov | |
| git submodule update --init --recursive | |
| cd htslib | |
| autoheader && autoconf && autoreconf --install | |
| ./configure --enable-s3 --disable-lzma --disable-bz2 | |
| make version.h && make | |
| cd .. | |
| CYTHONIZE=1 python setup.py build_ext -i | |
| - name: Test | |
| run: | | |
| pytest --cov cyvcf2 --cov-report term-missing | |