modified: utils/mysql/gwas2mysql.R

boxiangliu · Apr 26, 2018 · 261cbbf · 261cbbf
1 parent daf0711
commit 261cbbf
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/utils/mysql/gwas2mysql.R b/utils/mysql/gwas2mysql.R
@@ -17,7 +17,7 @@ read_gwas = function(gwas_fn){
 	message(command)
 
 	gwas=tryCatch({
-		fread(command)
+		fread(command,header=TRUE)
 		}, 
 		error = function(e) {NULL}
 		)
@@ -139,6 +139,7 @@ for (gwas_fn in gwas_fn_list){
 	index_table(table_name)
 }
 
+
 gwas_dir = '/mnt/data/shared/datasets/gwas/batch5/'
 gwas_fn_list = list.files(gwas_dir,pattern='txt.gz$')
 for (gwas_fn in gwas_fn_list){