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Improve headless calling of intertrabecular angles (#318)
* Initialise the pixel spacing class variable * ITA: improve handling of calibrated images and test them explicitly Only isotropic images are tested so far, anisotropic pixel spacing causes the tests to cancel. * Update README.md (#302) * ITA: add tests for calibrated isotropic pixel spacing * ITA: add tests that run in headless mode Includes a new base class AbstractWrapperHeadlessTest that other tests of headless functionality can extend. This is useful for checking that wrapper plugins behave as expected when called from macros and Python scripts, or from other Java code. * Remove redundant copyright statement
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...rPlugins/src/test/java/org/bonej/wrapperPlugins/headless/AbstractWrapperHeadlessTest.java
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| /*- | ||
| * #%L | ||
| * High-level BoneJ2 commands. | ||
| * %% | ||
| * Copyright (C) 2015 - 2020 Michael Doube, BoneJ developers | ||
| * %% | ||
| * Redistribution and use in source and binary forms, with or without | ||
| * modification, are permitted provided that the following conditions are met: | ||
| * | ||
| * 1. Redistributions of source code must retain the above copyright notice, | ||
| * this list of conditions and the following disclaimer. | ||
| * 2. Redistributions in binary form must reproduce the above copyright notice, | ||
| * this list of conditions and the following disclaimer in the documentation | ||
| * and/or other materials provided with the distribution. | ||
| * | ||
| * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" | ||
| * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE | ||
| * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE | ||
| * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE | ||
| * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR | ||
| * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF | ||
| * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS | ||
| * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN | ||
| * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) | ||
| * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE | ||
| * POSSIBILITY OF SUCH DAMAGE. | ||
| * #L% | ||
| */ | ||
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| package org.bonej.wrapperPlugins.headless; | ||
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| import net.imagej.ImageJ; | ||
| import org.bonej.utilities.SharedTable; | ||
| import org.junit.After; | ||
| import org.junit.AfterClass; | ||
| import org.junit.Before; | ||
| import org.junit.BeforeClass; | ||
| import org.scijava.command.CommandService; | ||
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| /** | ||
| * An abstract base test class that handles basic setup and tear down | ||
| * for testing wrapper plugins in headless mode. | ||
| * <p> | ||
| * NB Remember to call the methods in this class if you override/hide the methods! | ||
| * </p> | ||
| * @author Richard Domander | ||
| * @author Michael Doube | ||
| */ | ||
| public abstract class AbstractWrapperHeadlessTest { | ||
| private static ImageJ imageJ; | ||
| private static CommandService commandService; | ||
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| protected static CommandService command() { | ||
| return commandService; | ||
| } | ||
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| protected static ImageJ imageJ() { | ||
| return imageJ; | ||
| } | ||
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| @BeforeClass | ||
| public static void basicOneTimeSetup() { | ||
| imageJ = new ImageJ(); | ||
| commandService = imageJ.command(); | ||
| } | ||
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| @Before | ||
| public void setup() { | ||
| imageJ.ui().setHeadless(true); | ||
| } | ||
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| @After | ||
| public void tearDown() { | ||
| SharedTable.reset(); | ||
| } | ||
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| @AfterClass | ||
| public static void basicOneTimeTearDown() { | ||
| imageJ.context().dispose(); | ||
| imageJ = null; | ||
| commandService = null; | ||
| } | ||
| } |
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