Initial commit of NeuroBayes C++ Interface

CMakeLists.txt

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+cmake_minimum_required (VERSION 2.8.7)
+
+set(CMAKE_C_COMPILER gcc)
+set(CMAKE_CXX_COMPILER g++)
+
+project (NeuroBayes)
+enable_language (Fortran)
+
+if(DEFINED ENV{MAXNODE_PREPRO})
+    set(MAXNODE_PREPRO $ENV{MAXNODE_PREPRO})
+else()
+    set(MAXNODE_PREPRO 100)
+endif()
+
+set(CMAKE_Fortran_FLAGS " -fno-automatic -fcheck=bound -Wno-unused -cpp ")
+
+set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -O2 -std=c++0x -Wall -Wextra")
+
+configure_file (
+  "${PROJECT_SOURCE_DIR}/cpp_interface/nb_param.hh.in"
+  "${PROJECT_SOURCE_DIR}/cpp_interface/nb_param.hh"
+)
+
+add_library(NeuroBayesCore_shared SHARED IMPORTED)
+set_target_properties(NeuroBayesCore_shared PROPERTIES IMPORTED_LOCATION "${PROJECT_SOURCE_DIR}/core/libNeuroBayesCore_shared.so")
+
+set(NeuroBayesCPPInterface_HEADERS
+    "${PROJECT_SOURCE_DIR}/cpp_interface/nb_cpp_utils.h"
+    "${PROJECT_SOURCE_DIR}/cpp_interface/NeuroBayesExpert.hh"
+    "${PROJECT_SOURCE_DIR}/cpp_interface/NeuroBayesTeacher.hh"
+    "${PROJECT_SOURCE_DIR}/cpp_interface/nb_param.hh"
+    "${PROJECT_SOURCE_DIR}/cpp_interface/nb_c_utils.h"
+)
+
+set(NeuroBayesCPPInterface_SOURCES
+    "${PROJECT_SOURCE_DIR}/cpp_interface/NeuroBayesExpert.cc"
+    "${PROJECT_SOURCE_DIR}/cpp_interface/NeuroBayesTeacher.cc"
+    "${PROJECT_SOURCE_DIR}/cpp_interface/nb_cpp_utils.cc"
+)
+
+add_library(NeuroBayesCPPInterface_shared SHARED ${NeuroBayesCPPInterface_SOURCES} ${NeuroBayesCPPInterface_HEADERS})
+target_link_libraries(NeuroBayesCPPInterface_shared NeuroBayesCore_shared)
+
+include_directories("${PROJECT_SOURCE_DIR}/cpp_interface/")
+
+add_executable(crosstest "${PROJECT_SOURCE_DIR}/cpp_interface_tests/crosstest.cc")
+target_link_libraries(crosstest NeuroBayesCPPInterface_shared)
+
+add_executable(interfacetest "${PROJECT_SOURCE_DIR}/cpp_interface_tests/interfacetest.cc" ${NeuroBayesCPPInterface_HEADERS})
+target_link_libraries(interfacetest NeuroBayesCPPInterface_shared)
+
+add_executable(minimaltest "${PROJECT_SOURCE_DIR}/cpp_interface_tests/minimaltest.cc" ${NeuroBayesCPPInterface_HEADERS})
+target_link_libraries(minimaltest NeuroBayesCPPInterface_shared)
+
+
+install(TARGETS NeuroBayesCPPInterface_shared minimaltest
+     LIBRARY DESTINATION lib
+     ARCHIVE DESTINATION lib
+     RUNTIME DESTINATION bin   
+)
+
+get_target_property(NeuroBayesCore_LOCATION NeuroBayesCore_shared LOCATION)
+install(FILES ${NeuroBayesCore_LOCATION} DESTINATION lib)
+install(FILES ${NeuroBayesCPPInterface_HEADERS} DESTINATION include)
+
+set(CPACK_PACKAGE_VERSION 4.3)
+set(CPACK_GENERATOR "RPM;DEB;TGZ")
+set(CPACK_PACKAGE_NAME "NeuroBayes")
+set(CPACK_PACKAGE_RELEASE 1)
+set(CPACK_PACKAGE_CONTACT "[email protected]")
+set(CPACK_PACKAGE_VENDOR "Blue Yonder")
+set(CPACK_PACKAGING_INSTALL_PREFIX ${CMAKE_INSTALL_PREFIX})
+set(CPACK_PACKAGE_FILE_NAME "${CPACK_PACKAGE_NAME}-${CPACK_PACKAGE_VERSION}-${CPACK_PACKAGE_RELEASE}.${CMAKE_SYSTEM_PROCESSOR}")
+
+configure_file("${CMAKE_CURRENT_SOURCE_DIR}/neurobayes.spec.in" "${CMAKE_CURRENT_BINARY_DIR}/neurobayes.spec" @ONLY IMMEDIATE)
+set(CPACK_RPM_USER_BINARY_SPECFILE "${CMAKE_CURRENT_BINARY_DIR}/neurobayes.spec")
+
+SET(CPACK_DEBIAN_PACKAGE_PRIORITY "optional")
+SET(CPACK_DEBIAN_PACKAGE_SECTION "libs")
+SET(CPACK_DEBIAN_ARCHITECTURE ${CMAKE_SYSTEM_PROCESSOR})
+
+
+include(CPack)

README.md

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+# NeuroBayes C++ Interface
+
+Interface to NeuroBayes(R) for academic purpose
+
+The NeuroBayes package is available under the NeuroBayes license from Blue Yonder GmbH.
+Please contact [email protected] for general information and for information about the license.
+
+This repository provides the C++ Interface of the NeuroBayes package. You can only build this project if you
+obtained the NeuroBayes licence and NeuroBayes Core library from Blue Yonder GmbH.
+
+The NeuroBayes C++ Interface is usually already shipped with the NeuroBayes package.
+The NeuroBayes Core library does only depenend on a very small set of system libraries like libc and libgfortran,
+on the other hand the NeuroBayes C++ Interface depends on libstdc++.
+It may be necessary to recompile the C++ Interface in the future to support new platforms,
+hence Blue Yonder GmbH decided to release the source code of the C++ Interface under the MIT licence for the convinience
+of the NeuroBayes user community (in particular for high energy physics experiments).
+
+
+# Build process and installation
+  * Extract the NeuroBayes Core shared library named libNeuroBayesCore\_shared.so from the package you obtained from Blue Yonder GmbH and copy it into the previously empty directory core.
+  * cd build/
+  * cmake ../
+  * make
+
+
+## Building rpm, deb or tgz packages
+Optionally you can build rpm, deb and tgz packages using
+  * make package
+Additional third-party libraries are required to do so.
+
+
+## Maxnode
+The NeuroBayes Core library is optimized for a maximum number of nodes.
+The maximum number of nodes is printed by the NeuroBayes Teacher
+at the start of the program e.g. execute the minimaltest executable and search for NB\_MAXNODE.
+The default number is 100. If your library is optimized for a different number of nodes,
+you have to provide the correct number using an environment variable named MAXNODE\_PREPRO.
+during the build process e.g. MAXNODE\_PREPRO=200 cmake ../
+
+
+## Tests
+To verify the correctness of your executable, you can execute the following test suits:
+  * cd build
+  * ./minimaltest
+  * ./interfacetest
+
+The minimaltest provides also a minimal example to get you started.