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rhpvorderman committed Mar 26, 2020
1 parent 574bb47 commit 9febd09
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion umi-tools.wdl
Original file line number Diff line number Diff line change
Expand Up @@ -90,7 +90,7 @@ task Dedup {
--stdin ~{inputBam} \
--stdout ~{outputBamPath} \
~{"--output-stats " + statsPrefix} \
~{"--umi-separator=" + umiSeparator}
~{"--umi-separator=" + umiSeparator} \
~{true="--paired" false="" paired}
samtools index ~{outputBamPath} ~{outputBamIndex}
}
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