Use TRAPI 1.5 KP registrations

config/api_list.yaml

@@ -1,6 +1,9 @@
 ---
 # APIs in this list are accessible by the main endpoints v1/query and v1/asyncquery
 include:
+  # external (not Su / Wu Lab), non-TRAPI APIs
+  # annotated with SmartAPI x-bte
+  # also accessible by v1/team/Service Provider/ endpoints and by api-specific endpoints
   - id: d22b657426375a5295e7da8a303b9893
     name: Monarch API
   - id: 0212611d1c670f9107baf00b77f0889a
@@ -103,45 +106,45 @@ include:
   # not accessible by team or api-specific endpoints
   # Notes: We don't ingest the following:
   # - Automat-robokop: seems to repeat a lot of data that is in the other APIs
-  - id: 97da45e75266b021fae885735befad07
-    name: Automat-ctd(Trapi v1.4.0)
-  - id: a80b9c70e756453d1ce8971b59fe1778
-    name: Automat-drug-central(Trapi v1.4.0)
-  - id: 2575e053d0a631433b447995e1bc9602
-    name: Automat-gtex(Trapi v1.4.0)
-  - id: 387f7a2c21656ddfcce5ccf9ea459049
-    name: Automat-gtopdb(Trapi v1.4.0)
-  - id: cd9fc0ca8cc6d9f56bd56a34766de791
-    name: Automat-gwas-catalog(Trapi v1.4.0)
-  - id: 8a1e2c2eade9fe3a932ba1dbb7f85688
-    name: Automat-hetio(Trapi v1.4.0)
-  - id: 067d3a847117c6f42896cc8cd140a704
-    name: Automat-hgnc(Trapi v1.4.0)
-  - id: 0658e8749b9601a5faba5157ba12eb06
-    name: Automat-hmdb(Trapi v1.4.0)
-  - id: 43cf256c660cc5bdeac23fdd3063d474
-    name: Automat-human-goa(Trapi v1.4.0)
-  - id: 76a164ff43e7ab39a5b98a782f6361bf
-    name: Automat-icees-kg(Trapi v1.4.0)
-  - id: 0b0a4d48ccd9ad2fd34ee53c34f87e94
-    name: Automat-intact(Trapi v1.4.0)
-  - id: 26ca4939d437c411bcb65b85a9dc2b99
-    name: Automat-panther(Trapi v1.4.0)
-  - id: 1c71f68839a44b1b857e79ae7f7e3381
-    name: Automat-pharos(Trapi v1.4.0)
-  - id: 465ff6de7ddf35ca8b2df6c0b01e6554
-    name: Automat-viral-proteome(Trapi v1.4.0)
+  - id: f82c01b15c46e024212c1a3271aaef0b
+    name: Automat-ctd(Trapi v1.5.0)
+  - id: 673b9fc76973dfa5fe3ed151fdbfc807
+    name: Automat-drug-central(Trapi v1.5.0)
+  - id: eef72049e4e01c020b7799f711e0e65b
+    name: Automat-gtex(Trapi v1.5.0)
+  - id: 759df287a21c30cd514df323be02a84b
+    name: Automat-gtopdb(Trapi v1.5.0)
+  - id: 349fed5531c094c33f10c071efe9d0de
+    name: Automat-gwas-catalog(Trapi v1.5.0)
+  - id: a5fe24f987331b58191e67598118f369
+    name: Automat-hetionet(Trapi v1.5.0)
+  - id: 8671309d2b94e413a4c1f9a9f82e4660
+    name: Automat-hgnc(Trapi v1.5.0)
+  - id: 0a1c0f46f4950b82b1aa7dad27aad10a
+    name: Automat-hmdb(Trapi v1.5.0)
+  - id: cb7a43d444cb3dcbe8e3c78d314334cf
+    name: Automat-human-goa(Trapi v1.5.0)
+  - id: c64d583402f21cc85810d33befe49c86
+    name: Automat-icees-kg(Trapi v1.5.0)
+  - id: b4023595664163e0aec5e825da150e16
+    name: Automat-intact(Trapi v1.5.0)
+  - id: 3f78d3fb8a7a577fbc7cc0a913ac3fc5
+    name: Automat-panther(Trapi v1.5.0)
+  - id: 1f057c53d42694686369f0e542f965c6
+    name: Automat-pharos(Trapi v1.5.0)
+  - id: 2aca41fc6c3dc426ec6583d42603be02
+    name: Automat-viral-proteome(Trapi v1.5.0)
   # TRAPI (Translator standard) APIs: COHD
   # not accessible by team or api-specific endpoints
   # notes on COHD:
   # - DON'T INGEST 'Columbia Open Health Data (COHD)'/70117385218edc9bc01633829011dfcf
   #   IT IS NOT TRAPI (and may be outdated?)
   # - COHD for COVID-19 should work but BTE gets a 500 when retrieving meta_knowledge_graph...
   #   smartapi ID fc8245e92c970298449294fc04211869
-  - id: af364143267ad5235bf78c1511223875
+  - id: d4290b6b5741e6da6cc6a6f42e0cfdb5
     name: COHD TRAPI
   # TRAPI (Translator standard) APIs: CHP
   # not accessible by team or api-specific endpoints
-  - id: 23f770568b92b7a82063989b3ddd9706
+  - id: 412af63e15b73e5a30778aac84ce313f
     name: Connections Hypothesis Provider API
 exclude: [] # if adding exclude remove these square brackets

src/controllers/cron/update_local_smartapi.ts

@@ -184,7 +184,7 @@ function getTRAPIWithPredicatesEndpoint(specs: Spec[]): API[] {
         if ("/meta_knowledge_graph" in spec.paths) {
           if (
             Object.prototype.hasOwnProperty.call(spec.info["x-trapi"], "version") &&
-            spec.info["x-trapi"].version.includes("1.4")
+            spec.info["x-trapi"].version.includes("1.5")
           ) {
             api["predicates_path"] = "/meta_knowledge_graph";
             trapi.push(api);

src/controllers/threading/taskHandler.ts

@@ -56,7 +56,7 @@ async function runTask({
 }: InnerTaskData) {
   debug(`Worker thread ${threadId} beginning ${Piscina.workerData.queue} task.`);
 
-  global.SCHEMA_VERSION = "1.4.0";
+  global.SCHEMA_VERSION = "1.5.0";
 
   global.parentPort = port;
   port.postMessage({ threadId, registerId: true });