chore: Updated compiled documentation [skip ci]

biosimulators · Jun 20, 2023 · de844e7 · de844e7
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diff --git a/docs/_static/documentation_options.js b/docs/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '0.1.179',
+    VERSION: '0.1.180',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

diff --git a/docs/about.html b/docs/about.html
@@ -8,7 +8,7 @@
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-    <title>About BioSimulators utils &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>About BioSimulators utils &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/genindex.html b/docs/genindex.html
@@ -7,7 +7,7 @@
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-    <title>Index &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>Index &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/index.html b/docs/index.html
@@ -8,7 +8,7 @@
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     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>BioSimulators utils documentation &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>BioSimulators utils documentation &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/installation.html b/docs/installation.html
@@ -8,7 +8,7 @@
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-    <title>Installation instructions &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>Installation instructions &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/py-modindex.html b/docs/py-modindex.html
@@ -7,7 +7,7 @@
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-    <title>Python Module Index &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>Python Module Index &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/search.html b/docs/search.html
@@ -6,7 +6,7 @@
 
   <head>
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-    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><title>Search - BioSimulators utils 0.1.179 documentation</title>
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><title>Search - BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/searchindex.js b/docs/searchindex.js
diff --git a/docs/source/biosimulators_utils.archive.html b/docs/source/biosimulators_utils.archive.html
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-    <title>biosimulators_utils.archive package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.archive package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.biosimulations.html b/docs/source/biosimulators_utils.biosimulations.html
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-    <title>biosimulators_utils.biosimulations package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.biosimulations package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.combine.html b/docs/source/biosimulators_utils.combine.html
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-    <title>biosimulators_utils.combine package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.combine package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.gh_action.html b/docs/source/biosimulators_utils.gh_action.html
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-    <title>biosimulators_utils.gh_action package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.gh_action package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.html b/docs/source/biosimulators_utils.html
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-    <title>biosimulators_utils package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.kisao.html b/docs/source/biosimulators_utils.kisao.html
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-    <title>biosimulators_utils.kisao package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.kisao package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.licensing.html b/docs/source/biosimulators_utils.licensing.html
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-    <title>biosimulators_utils.licensing package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.licensing package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.log.html b/docs/source/biosimulators_utils.log.html
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-    <title>biosimulators_utils.log package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.log package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.model_lang.bngl.html b/docs/source/biosimulators_utils.model_lang.bngl.html
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-    <title>biosimulators_utils.model_lang.bngl package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.model_lang.bngl package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.model_lang.cellml.html b/docs/source/biosimulators_utils.model_lang.cellml.html
@@ -8,7 +8,7 @@
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-    <title>biosimulators_utils.model_lang.cellml package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.model_lang.cellml package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.model_lang.html b/docs/source/biosimulators_utils.model_lang.html
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-    <title>biosimulators_utils.model_lang package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.model_lang package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.model_lang.lems.html b/docs/source/biosimulators_utils.model_lang.lems.html
@@ -8,7 +8,7 @@
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-    <title>biosimulators_utils.model_lang.lems package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.model_lang.lems package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.model_lang.neuroml.html b/docs/source/biosimulators_utils.model_lang.neuroml.html
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-    <title>biosimulators_utils.model_lang.neuroml package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.model_lang.neuroml package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.model_lang.rba.html b/docs/source/biosimulators_utils.model_lang.rba.html
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-    <title>biosimulators_utils.model_lang.rba package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.model_lang.rba package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.model_lang.sbml.html b/docs/source/biosimulators_utils.model_lang.sbml.html
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-    <title>biosimulators_utils.model_lang.sbml package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.model_lang.sbml package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.model_lang.smoldyn.html b/docs/source/biosimulators_utils.model_lang.smoldyn.html
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-    <title>biosimulators_utils.model_lang.smoldyn package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.model_lang.smoldyn package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.model_lang.xpp.html b/docs/source/biosimulators_utils.model_lang.xpp.html
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-    <title>biosimulators_utils.model_lang.xpp package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.model_lang.xpp package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.omex_meta.html b/docs/source/biosimulators_utils.omex_meta.html
@@ -8,7 +8,7 @@
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     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>biosimulators_utils.omex_meta package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.omex_meta package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.ref.html b/docs/source/biosimulators_utils.ref.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>biosimulators_utils.ref package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.ref package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 
@@ -700,7 +700,7 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 </dl>
 <dl class="py function">
 <dt class="sig sig-object py" id="biosimulators_utils.ref.utils.get_pubmed_central_open_access_graphics">
-<span class="sig-prename descclassname"><span class="pre">biosimulators_utils.ref.utils.</span></span><span class="sig-name descname"><span class="pre">get_pubmed_central_open_access_graphics</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">id</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dirname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">session=&lt;module</span> <span class="pre">'requests'</span> <span class="pre">from</span> <span class="pre">'/opt/hostedtoolcache/Python/3.9.16/x64/lib/python3.9/site-packages/requests/__init__.py'&gt;</span></span></em><span class="sig-paren">)</span><a class="reference external" href="https://github.com/biosimulators/Biosimulators_utils/blob/dev/biosimulators_utils/ref/utils.py"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#biosimulators_utils.ref.utils.get_pubmed_central_open_access_graphics" title="Permalink to this definition">#</a></dt>
+<span class="sig-prename descclassname"><span class="pre">biosimulators_utils.ref.utils.</span></span><span class="sig-name descname"><span class="pre">get_pubmed_central_open_access_graphics</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">id</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dirname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">session=&lt;module</span> <span class="pre">'requests'</span> <span class="pre">from</span> <span class="pre">'/opt/hostedtoolcache/Python/3.9.17/x64/lib/python3.9/site-packages/requests/__init__.py'&gt;</span></span></em><span class="sig-paren">)</span><a class="reference external" href="https://github.com/biosimulators/Biosimulators_utils/blob/dev/biosimulators_utils/ref/utils.py"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#biosimulators_utils.ref.utils.get_pubmed_central_open_access_graphics" title="Permalink to this definition">#</a></dt>
 <dd><p>Get the open access graphics for a publication in PubMed Central</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
@@ -721,7 +721,7 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 
 <dl class="py function">
 <dt class="sig sig-object py" id="biosimulators_utils.ref.utils.get_reference">
-<span class="sig-prename descclassname"><span class="pre">biosimulators_utils.ref.utils.</span></span><span class="sig-name descname"><span class="pre">get_reference</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">pubmed_id=None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">doi=None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cross_ref_session=&lt;module</span> <span class="pre">'requests'</span> <span class="pre">from</span> <span class="pre">'/opt/hostedtoolcache/Python/3.9.16/x64/lib/python3.9/site-packages/requests/__init__.py'&gt;</span></span></em><span class="sig-paren">)</span><a class="reference external" href="https://github.com/biosimulators/Biosimulators_utils/blob/dev/biosimulators_utils/ref/utils.py"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#biosimulators_utils.ref.utils.get_reference" title="Permalink to this definition">#</a></dt>
+<span class="sig-prename descclassname"><span class="pre">biosimulators_utils.ref.utils.</span></span><span class="sig-name descname"><span class="pre">get_reference</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">pubmed_id=None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">doi=None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cross_ref_session=&lt;module</span> <span class="pre">'requests'</span> <span class="pre">from</span> <span class="pre">'/opt/hostedtoolcache/Python/3.9.17/x64/lib/python3.9/site-packages/requests/__init__.py'&gt;</span></span></em><span class="sig-paren">)</span><a class="reference external" href="https://github.com/biosimulators/Biosimulators_utils/blob/dev/biosimulators_utils/ref/utils.py"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#biosimulators_utils.ref.utils.get_reference" title="Permalink to this definition">#</a></dt>
 <dd><p>Get data about a reference by its PubMed id and/or DOI</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>

diff --git a/docs/source/biosimulators_utils.report.html b/docs/source/biosimulators_utils.report.html
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-    <title>biosimulators_utils.report package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.report package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.sedml.html b/docs/source/biosimulators_utils.sedml.html
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-    <title>biosimulators_utils.sedml package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.sedml package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.simulator.html b/docs/source/biosimulators_utils.simulator.html
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-    <title>biosimulators_utils.simulator package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.simulator package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.simulator_registry.html b/docs/source/biosimulators_utils.simulator_registry.html
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-    <title>biosimulators_utils.simulator_registry package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.simulator_registry package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.utils.html b/docs/source/biosimulators_utils.utils.html
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-    <title>biosimulators_utils.utils package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.utils package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.viz.html b/docs/source/biosimulators_utils.viz.html
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-    <title>biosimulators_utils.viz package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.viz package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.viz.vega.escher.html b/docs/source/biosimulators_utils.viz.vega.escher.html
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-    <title>biosimulators_utils.viz.vega.escher package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.viz.vega.escher package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.viz.vega.ginml.html b/docs/source/biosimulators_utils.viz.vega.ginml.html
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-    <title>biosimulators_utils.viz.vega.ginml package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.viz.vega.ginml package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.viz.vega.html b/docs/source/biosimulators_utils.viz.vega.html
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-    <title>biosimulators_utils.viz.vega package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.viz.vega package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.viz.vega.sbgn.html b/docs/source/biosimulators_utils.viz.vega.sbgn.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>biosimulators_utils.viz.vega.sbgn package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.viz.vega.sbgn package &#8212; BioSimulators utils 0.1.180 documentation</title>
 
 
 

diff --git a/docs/source/biosimulators_utils.xml.html b/docs/source/biosimulators_utils.xml.html
@@ -8,7 +8,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>biosimulators_utils.xml package &#8212; BioSimulators utils 0.1.179 documentation</title>
+    <title>biosimulators_utils.xml package &#8212; BioSimulators utils 0.1.180 documentation</title>