Merge branch 'dev' of ssh://github.com/biosimulators/Biosimulators_ut…

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biosimulators · Dec 15, 2021 · 782ea87 · 782ea87
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@@ -5,7 +5,7 @@
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+    <title>biosimulators_utils.gh_action package &#8212; BioSimulators utils 0.1.145 documentation</title>
 
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-    <title>biosimulators_utils.kisao package &#8212; BioSimulators utils 0.1.144 documentation</title>
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-    <title>biosimulators_utils.licensing package &#8212; BioSimulators utils 0.1.144 documentation</title>
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-    <title>biosimulators_utils.log package &#8212; BioSimulators utils 0.1.144 documentation</title>
+    <title>biosimulators_utils.log package &#8212; BioSimulators utils 0.1.145 documentation</title>
 
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-    <title>biosimulators_utils.model_lang.bngl package &#8212; BioSimulators utils 0.1.144 documentation</title>
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-    <title>biosimulators_utils.model_lang package &#8212; BioSimulators utils 0.1.144 documentation</title>
+    <title>biosimulators_utils.model_lang package &#8212; BioSimulators utils 0.1.145 documentation</title>
 
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-    <title>biosimulators_utils.model_lang.sbml package &#8212; BioSimulators utils 0.1.144 documentation</title>
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-    <title>biosimulators_utils.model_lang.smoldyn package &#8212; BioSimulators utils 0.1.144 documentation</title>
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-    <title>biosimulators_utils.model_lang.xpp package &#8212; BioSimulators utils 0.1.144 documentation</title>
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diff --git a/docs/source/biosimulators_utils.omex_meta.html b/docs/source/biosimulators_utils.omex_meta.html
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-    <title>biosimulators_utils.omex_meta package &#8212; BioSimulators utils 0.1.144 documentation</title>
+    <title>biosimulators_utils.omex_meta package &#8212; BioSimulators utils 0.1.145 documentation</title>
 
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diff --git a/docs/source/biosimulators_utils.ref.html b/docs/source/biosimulators_utils.ref.html
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-    <title>biosimulators_utils.ref package &#8212; BioSimulators utils 0.1.144 documentation</title>
+    <title>biosimulators_utils.ref package &#8212; BioSimulators utils 0.1.145 documentation</title>
 
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@@ -602,7 +602,7 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 </dl>
 <dl class="py function">
 <dt class="sig sig-object py" id="biosimulators_utils.ref.utils.get_pubmed_central_open_access_graphics">
-<span class="sig-prename descclassname"><span class="pre">biosimulators_utils.ref.utils.</span></span><span class="sig-name descname"><span class="pre">get_pubmed_central_open_access_graphics</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">id</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dirname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">session=&lt;module</span> <span class="pre">'requests'</span> <span class="pre">from</span> <span class="pre">'/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/requests/__init__.py'&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">max_num_ftp_tries=3</span></span></em><span class="sig-paren">)</span><a class="reference external" href="https://github.com/biosimulators/Biosimulators_utils/blob/dev/biosimulators_utils/ref/utils.py"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#biosimulators_utils.ref.utils.get_pubmed_central_open_access_graphics" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">biosimulators_utils.ref.utils.</span></span><span class="sig-name descname"><span class="pre">get_pubmed_central_open_access_graphics</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">id</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dirname</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">session=&lt;module</span> <span class="pre">'requests'</span> <span class="pre">from</span> <span class="pre">'/opt/hostedtoolcache/Python/3.9.9/x64/lib/python3.9/site-packages/requests/__init__.py'&gt;</span></span></em><span class="sig-paren">)</span><a class="reference external" href="https://github.com/biosimulators/Biosimulators_utils/blob/dev/biosimulators_utils/ref/utils.py"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#biosimulators_utils.ref.utils.get_pubmed_central_open_access_graphics" title="Permalink to this definition">¶</a></dt>
 <dd><p>Get the open access graphics for a publication in PubMed Central</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters</dt>

diff --git a/docs/source/biosimulators_utils.report.html b/docs/source/biosimulators_utils.report.html
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-    <title>biosimulators_utils.report package &#8212; BioSimulators utils 0.1.144 documentation</title>
+    <title>biosimulators_utils.report package &#8212; BioSimulators utils 0.1.145 documentation</title>
 
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diff --git a/docs/source/biosimulators_utils.sedml.html b/docs/source/biosimulators_utils.sedml.html
@@ -6,7 +6,7 @@
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-    <title>biosimulators_utils.sedml package &#8212; BioSimulators utils 0.1.144 documentation</title>
+    <title>biosimulators_utils.sedml package &#8212; BioSimulators utils 0.1.145 documentation</title>
 
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@@ -865,7 +865,7 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 <dl class="py attribute">
 <dt class="sig sig-object py" id="biosimulators_utils.sedml.data_model.DataGenerator.parameters">
 <span class="sig-name descname"><span class="pre">parameters</span></span><a class="reference external" href="https://github.com/biosimulators/Biosimulators_utils/blob/dev/biosimulators_utils/sedml/data_model.py"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#biosimulators_utils.sedml.data_model.DataGenerator.parameters" title="Permalink to this definition">¶</a></dt>
-<dd><p>variables</p>
+<dd><p>parameters</p>
 <dl class="field-list simple">
 <dt class="field-odd">Type</dt>
 <dd class="field-odd"><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <a class="reference internal" href="#biosimulators_utils.sedml.data_model.Parameter" title="biosimulators_utils.sedml.data_model.Parameter"><code class="xref py py-obj docutils literal notranslate"><span class="pre">Parameter</span></code></a></p>
@@ -1054,7 +1054,7 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 <dl class="py attribute">
 <dt class="sig sig-object py" id="biosimulators_utils.sedml.data_model.FunctionalRange.parameters">
 <span class="sig-name descname"><span class="pre">parameters</span></span><a class="reference external" href="https://github.com/biosimulators/Biosimulators_utils/blob/dev/biosimulators_utils/sedml/data_model.py"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#biosimulators_utils.sedml.data_model.FunctionalRange.parameters" title="Permalink to this definition">¶</a></dt>
-<dd><p>variables</p>
+<dd><p>parameters</p>
 <dl class="field-list simple">
 <dt class="field-odd">Type</dt>
 <dd class="field-odd"><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <a class="reference internal" href="#biosimulators_utils.sedml.data_model.Parameter" title="biosimulators_utils.sedml.data_model.Parameter"><code class="xref py py-obj docutils literal notranslate"><span class="pre">Parameter</span></code></a></p>