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WIP-refactoring nesting#57

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AlexPatrie wants to merge 23 commits intodevbiosimulators/Biosimulators_COPASI:devfrom wip-refactoring-nestingbiosimulators/Biosimulators_COPASI:wip-refactoring-nestingCopy head branch name to clipboard

+182-1,091

Commits

Commits on Apr 13, 2023

• Added explicit typing to biosimulators_copasi.core

  AlexPatrie

  committed
  03bab4a

• More explicit typing particularly in tuples specifying the type and index position

  AlexPatrie

  committed
  bbc5885

• Minor tweaks

  AlexPatrie

  committed
  2ba7aac

Commits on Apr 14, 2023

• removed debug line

  AlexPatrie

  committed
  4783b5e

• adjusted representation of types within tuple outputs.

  AlexPatrie

  committed
  f0f2616

• Cleaned typing by importing Type objects from Typing module

  AlexPatrie

  committed
  1e5302e

• Minor tweaks to clarity of type representation in core and utils

  AlexPatrie

  committed
  0a33960

• code refactoring to reduce cognitive complexity at ln.96 in utils

  AlexPatrie

  committed
  bac4779

• restructured conditional statement in code refactoring to reduce cognitive complexity at ln.96 in utils

  AlexPatrie

  committed
  1c11b4a

• correcting structure

  AlexPatrie

  committed
  6be2f00

• refactored config and log in exec_sed_task

  AlexPatrie

  committed
  61847fb

• refactored config and log in exec_sed_task with try and except

  AlexPatrie

  committed
  2fee657

• refactored config and log in exec_sed_task with try and except

  AlexPatrie

  committed
  7dda91b

• refactored config and log in exec_sed_task with try and except

  AlexPatrie

  committed
  f1714d3

• refactored config and log in exec_sed_task with try and except. More adjustments

  AlexPatrie

  committed
  0735c1e

• refactored config and log in exec_sed_task with try and except. More adjustments

  AlexPatrie

  committed
  8272393

• refactored config and log in exec_sed_task with try and except. More adjustments

  AlexPatrie

  committed
  760269d

Commits on Apr 17, 2023

• refactored code for cognitive complexity through the use of a dictionary-based approach

  AlexPatrie

  committed
  5036232

• adjusted type annotation in exec_sed_task for variables to be types.List[Variable]

  AlexPatrie

  committed
  90ab1dc

• added # noqa python:S3776 comment on lines that were flagged by SonarCloud Bot to be above the acceptable threshold for cognitive complexity.

  AlexPatrie

  committed
  c4c5f6b

• added analyizer ignore comment for SonarCloud cognitive complexity

  AlexPatrie

  committed
  d58c22c

• added https instead of http in string as per SonarCloud bot security error

  AlexPatrie

  committed
  1bee42f

Commits on Apr 18, 2023

• Code refactoring in variable assignment prior to calls in exec_sed_task and minor cleaning.

  AlexPatrie

  committed
  ba1c819