Skip to content

Commit

Permalink
updating to biosimulators-utils 0.1.30, incrementing version
Browse files Browse the repository at this point in the history
  • Loading branch information
jonrkarr committed Jan 5, 2021
1 parent e36109a commit b158048
Show file tree
Hide file tree
Showing 4 changed files with 7 additions and 4 deletions.
2 changes: 1 addition & 1 deletion Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@
# Base OS
FROM python:3.7.9-slim-buster

ARG VERSION="0.1.12"
ARG VERSION="0.1.13"
ARG SIMULATOR_VERSION=4.30.233

# metadata
Expand Down
2 changes: 1 addition & 1 deletion biosimulators_copasi/_version.py
Original file line number Diff line number Diff line change
@@ -1 +1 @@
__version__ = '0.1.12'
__version__ = '0.1.13'
5 changes: 4 additions & 1 deletion biosimulators_copasi/core.py
Original file line number Diff line number Diff line change
Expand Up @@ -13,9 +13,11 @@
from biosimulators_utils.sedml.data_model import (Task, ModelLanguage, UniformTimeCourseSimulation, # noqa: F401
DataGeneratorVariable, DataGeneratorVariableSymbol)
from biosimulators_utils.sedml import validation
from biosimulators_utils.sedml.exec import exec_sed_doc
from .data_model import KISAO_ALGORITHMS_MAP
from .utils import get_algorithm_id, set_algorithm_parameter_value
import COPASI
import functools
import math
import numpy
import warnings
Expand Down Expand Up @@ -43,7 +45,8 @@ def exec_sedml_docs_in_combine_archive(archive_filename, out_dir,
bundle_outputs (:obj:`bool`, optional): if :obj:`True`, bundle outputs into archives for reports and plots
keep_individual_outputs (:obj:`bool`, optional): if :obj:`True`, keep individual output files
"""
exec_sedml_docs_in_archive(archive_filename, exec_sed_task, out_dir,
sed_doc_executer = functools.partial(exec_sed_doc, exec_sed_task)
exec_sedml_docs_in_archive(sed_doc_executer, archive_filename, out_dir,
apply_xml_model_changes=True,
report_formats=report_formats,
plot_formats=plot_formats,
Expand Down
2 changes: 1 addition & 1 deletion requirements.txt
Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
biosimulators_utils >= 0.1.28
biosimulators_utils >= 0.1.30
numpy
python_copasi >= 4.30.233

0 comments on commit b158048

Please sign in to comment.