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Try not explicitly installing amici
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Explicitly installing it seems to have problems with sympy, even if sympy is clearly already installed.  However, amici is a dependency of biosimulators_amici, so it should be installed already anyway?  Let's see what happens.
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luciansmith committed Jun 23, 2023
1 parent 55406a5 commit 7d407fd
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2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -46,7 +46,7 @@ RUN apt-get update -y \
# Copy code for command-line interface into image and install it
COPY . /root/Biosimulators_AMICI
RUN pip install pip==23.0.1
RUN pip install sympy /root/Biosimulators_AMICI amici==${SIMULATOR_VERSION} \
RUN pip install sympy /root/Biosimulators_AMICI \ # amici==${SIMULATOR_VERSION} \
&& rm -rf /root/Biosimulators_AMICI
ENV VERBOSE=0 \
MPLBACKEND=PDF
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