Added association for environmental process association - issue #1560 #1561
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| minimum_cardinality: 2 | ||
| conditioned by qualifier: | ||
| description: >- | ||
| This property applies to the qualified association and either upregulates or downregulates it. It can accept any combination of 0 to 2 state variables and processes. |
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I'm curious how this relates to the regulates predicate:
biolink-model/biolink-model.yaml
Line 2820 in ac34f0b
and the
upregulated direction qualifier? Would you happen to have an example eenvironmental process association with all fields filled out that I can look at? (or in paragraph form/plain text)
| @@ -9702,6 +9734,59 @@ classes: | |||
| object: | |||
| range: molecular entity | |||
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| eenvironmental process association: | |||
| is_a: association | |||
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is the extra "e" here meaningful?
| - process context qualifier | ||
| - conditioned by qualifier | ||
| - ecosystem context qualifier | ||
| slot_usage: |
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thanks for the detail notes here, they really help!
| in_subset: | ||
| - ecolink | ||
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| conditioned by qualifier: |
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could you please add some examples here - I am not quite sure I fully understand what "conditioned by" means?
- can it have a value of [
upregulates,downregulates] in one record? - how does it relate to the direction qualifier suite (the enumeration for this qualifier has values
upregulatedanddownregulated). - how does it relate to the
regulatespredicate?
Maybe the necessity of this slot means we should think about breaking the association into two edges? I'm not sure; maybe an example would help?
| @@ -194,6 +193,10 @@ subsets: | |||
| description: >- | |||
| Sample/biosample datamodel | |||
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| ecolink: | |||
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now that we have a ecolink linkml schema, maybe we can change the subsets to mappings? :)
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more examples on the PR or in the schema itself would be helpful for the "conditioned by" slot.
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it would be lovely to change the subset to a series of mappings for each new component (to the ecolink schema).
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possibly typo in association name
Thank you for the detailed and informative association class! Its very well done.
First draft of
environmental process associationfor discussion and to be added to Biolink Model.