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@bioinfo-pf-curie

Institut Curie, Bioinformatics Core Facility

bioinformatics platform of the Institut Curie

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  1. TMB TMB Public

    Tumor Mutational Burden

    Python 58 17

  2. trainings trainings Public

    Ressources for Boinformatics Trainings

    8 7

  3. geniac geniac Public

    Automatic Configuration GENerator and Installer for nextflow pipeline. This is a set of utilities to implement the best practises for the development of bioinformatics analysis pipelines with nextflow

    Python 8 4

  4. RNA-seq RNA-seq Public

    Nextflow pipeline for RNA-seq pre-analysis (quality controls, genes/isoforms expression, isoform de-novo identification)

    HTML 6 3

  5. nf-VIF nf-VIF Public

    A Nextflow-based Virus Insertion Finder

    Python 6 5

  6. mpiBWA mpiBWA Public

    C 5 2

Repositories

Showing 10 of 46 repositories
  • PEVO Public

    Code used for the analysis of the PEVO project

    bioinfo-pf-curie/PEVO’s past year of commit activity
    R 0 1 0 0 Updated Apr 3, 2025
  • 4geniac Public

    Docker containers for geniac

    bioinfo-pf-curie/4geniac’s past year of commit activity
    Shell 0 0 1 0 Updated Apr 2, 2025
  • scRNA-SmartSeq3 Public

    Smartseq3 single-cell RNAseq data analysis.

    bioinfo-pf-curie/scRNA-SmartSeq3’s past year of commit activity
    Nextflow 1 0 0 0 Updated Mar 20, 2025
  • scEpigenome Public

    Processing of single-cell epigenomic data

    bioinfo-pf-curie/scEpigenome’s past year of commit activity
    Python 0 0 0 0 Updated Mar 7, 2025
  • raw-qc Public

    Nextflow pipeline for quality controls and trimming of raw sequencing data

    bioinfo-pf-curie/raw-qc’s past year of commit activity
    HTML 2 4 0 0 Updated Feb 12, 2025
  • proteinfold Public

    Prediction of protein 3D structure

    bioinfo-pf-curie/proteinfold’s past year of commit activity
    Nextflow 0 0 0 0 Updated Jan 24, 2025
  • proteinfold-containers Public
    bioinfo-pf-curie/proteinfold-containers’s past year of commit activity
    Dockerfile 0 GPL-3.0 0 1 0 Updated Jan 23, 2025
  • biogitflow Public

    Development worklow protocols for bioinformatics pipelines with git and gitlab

    bioinfo-pf-curie/biogitflow’s past year of commit activity
    HTML 0 0 2 0 Updated Jan 16, 2025
  • geniac-demo Public

    This is a demo pipeline with the best practises for the development of bioinformatics analysis pipelines with nextflow and geniac (Automatic Configuration GENerator and Installer for nextflow pipeline).

    bioinfo-pf-curie/geniac-demo’s past year of commit activity
    C 0 1 0 0 Updated Jan 10, 2025
  • geniac Public

    Automatic Configuration GENerator and Installer for nextflow pipeline. This is a set of utilities to implement the best practises for the development of bioinformatics analysis pipelines with nextflow

    bioinfo-pf-curie/geniac’s past year of commit activity
    Python 8 4 0 0 Updated Jan 10, 2025
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