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bioimage-io · Dec 6, 2024 · 5011023 · 5011023
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diff --git a/bioimageio/spec.html b/bioimageio/spec.html
diff --git a/bioimageio/spec/application.html b/bioimageio/spec/application.html
@@ -79,7 +79,7 @@ <h2>API Documentation</h2>
     </ul>
 
 
-            <footer>bioimageio.spec 0.5.3.5</footer>
+            <footer>bioimageio.spec 0.5.3.6</footer>
 
         <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
             built with <span class="visually-hidden">pdoc</span><img
@@ -212,7 +212,7 @@ <h1 class="modulename">
                             </div>
                             <div id="ApplicationDescr.source" class="classattr">
                                 <div class="attr variable">
-            <span class="name">source</span><span class="annotation">: Annotated[Optional[Annotated[Union[bioimageio.spec._internal.url.HttpUrl, bioimageio.spec._internal.io.RelativeFilePath, Annotated[pathlib.Path, PathType(path_type=&#39;file&#39;), FieldInfo(annotation=NoneType, required=True, title=&#39;FilePath&#39;)]], FieldInfo(annotation=NoneType, required=True, metadata=[_PydanticGeneralMetadata(union_mode=&#39;left_to_right&#39;)]), AfterValidator(func=&lt;function wo_special_file_name at 0x7f4eadf70040&gt;), PlainSerializer(func=&lt;function _package at 0x7f4eadf707c0&gt;, return_type=PydanticUndefined, when_used=&#39;unless-none&#39;)]], FieldInfo(annotation=NoneType, required=True, description=&#39;URL or path to the source of the application&#39;)]</span>
+            <span class="name">source</span><span class="annotation">: Annotated[Optional[Annotated[Union[bioimageio.spec._internal.url.HttpUrl, bioimageio.spec._internal.io.RelativeFilePath, Annotated[pathlib.Path, PathType(path_type=&#39;file&#39;), FieldInfo(annotation=NoneType, required=True, title=&#39;FilePath&#39;)]], FieldInfo(annotation=NoneType, required=True, metadata=[_PydanticGeneralMetadata(union_mode=&#39;left_to_right&#39;)]), AfterValidator(func=&lt;function wo_special_file_name at 0x7f9662bc4540&gt;), PlainSerializer(func=&lt;function _package at 0x7f9662bc6ca0&gt;, return_type=PydanticUndefined, when_used=&#39;unless-none&#39;)]], FieldInfo(annotation=NoneType, required=True, description=&#39;URL or path to the source of the application&#39;)]</span>
 
 
     </div>

diff --git a/bioimageio/spec/application/v0_2.html b/bioimageio/spec/application/v0_2.html
@@ -80,7 +80,7 @@ <h2>API Documentation</h2>
     </ul>
 
 
-            <footer>bioimageio.spec 0.5.3.5</footer>
+            <footer>bioimageio.spec 0.5.3.6</footer>
 
         <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
             built with <span class="visually-hidden">pdoc</span><img
@@ -254,7 +254,7 @@ <h5>Inherited Members</h5>
                             </div>
                             <div id="ApplicationDescr.source" class="classattr">
                                 <div class="attr variable">
-            <span class="name">source</span><span class="annotation">: Annotated[Optional[Annotated[Union[bioimageio.spec._internal.url.HttpUrl, bioimageio.spec._internal.io.RelativeFilePath, Annotated[pathlib.Path, PathType(path_type=&#39;file&#39;), FieldInfo(annotation=NoneType, required=True, title=&#39;FilePath&#39;)]], FieldInfo(annotation=NoneType, required=True, metadata=[_PydanticGeneralMetadata(union_mode=&#39;left_to_right&#39;)]), AfterValidator(func=&lt;function wo_special_file_name at 0x7f4eadf70040&gt;), PlainSerializer(func=&lt;function _package at 0x7f4eadf707c0&gt;, return_type=PydanticUndefined, when_used=&#39;unless-none&#39;)]], FieldInfo(annotation=NoneType, required=True, description=&#39;URL or path to the source of the application&#39;)]</span>
+            <span class="name">source</span><span class="annotation">: Annotated[Optional[Annotated[Union[bioimageio.spec._internal.url.HttpUrl, bioimageio.spec._internal.io.RelativeFilePath, Annotated[pathlib.Path, PathType(path_type=&#39;file&#39;), FieldInfo(annotation=NoneType, required=True, title=&#39;FilePath&#39;)]], FieldInfo(annotation=NoneType, required=True, metadata=[_PydanticGeneralMetadata(union_mode=&#39;left_to_right&#39;)]), AfterValidator(func=&lt;function wo_special_file_name at 0x7f9662bc4540&gt;), PlainSerializer(func=&lt;function _package at 0x7f9662bc6ca0&gt;, return_type=PydanticUndefined, when_used=&#39;unless-none&#39;)]], FieldInfo(annotation=NoneType, required=True, description=&#39;URL or path to the source of the application&#39;)]</span>
 
 
     </div>

diff --git a/bioimageio/spec/application/v0_3.html b/bioimageio/spec/application/v0_3.html
@@ -80,7 +80,7 @@ <h2>API Documentation</h2>
     </ul>
 
 
-            <footer>bioimageio.spec 0.5.3.5</footer>
+            <footer>bioimageio.spec 0.5.3.6</footer>
 
         <a class="attribution" title="pdoc: Python API documentation generator" href="https://pdoc.dev" target="_blank">
             built with <span class="visually-hidden">pdoc</span><img
@@ -115,7 +115,7 @@ <h1 class="modulename">
 </span><span id="L-14"><a href="#L-14"><span class="linenos">14</span></a><span class="kn">from</span> <span class="nn">..generic.v0_3</span> <span class="kn">import</span> <span class="n">CiteEntry</span> <span class="k">as</span> <span class="n">CiteEntry</span>
 </span><span id="L-15"><a href="#L-15"><span class="linenos">15</span></a><span class="kn">from</span> <span class="nn">..generic.v0_3</span> <span class="kn">import</span> <span class="n">DeprecatedLicenseId</span> <span class="k">as</span> <span class="n">DeprecatedLicenseId</span>
 </span><span id="L-16"><a href="#L-16"><span class="linenos">16</span></a><span class="kn">from</span> <span class="nn">..generic.v0_3</span> <span class="kn">import</span> <span class="n">Doi</span> <span class="k">as</span> <span class="n">Doi</span>
-</span><span id="L-17"><a href="#L-17"><span class="linenos">17</span></a><span class="kn">from</span> <span class="nn">..generic.v0_3</span> <span class="kn">import</span> <span class="n">GenericDescrBase</span><span class="p">,</span> <span class="n">LinkedResourceNode</span><span class="p">,</span> <span class="n">ResourceId</span>
+</span><span id="L-17"><a href="#L-17"><span class="linenos">17</span></a><span class="kn">from</span> <span class="nn">..generic.v0_3</span> <span class="kn">import</span> <span class="n">GenericDescrBase</span><span class="p">,</span> <span class="n">LinkedResourceBase</span><span class="p">,</span> <span class="n">ResourceId</span>
 </span><span id="L-18"><a href="#L-18"><span class="linenos">18</span></a><span class="kn">from</span> <span class="nn">..generic.v0_3</span> <span class="kn">import</span> <span class="n">LicenseId</span> <span class="k">as</span> <span class="n">LicenseId</span>
 </span><span id="L-19"><a href="#L-19"><span class="linenos">19</span></a><span class="kn">from</span> <span class="nn">..generic.v0_3</span> <span class="kn">import</span> <span class="n">LinkedResource</span> <span class="k">as</span> <span class="n">LinkedResource</span>
 </span><span id="L-20"><a href="#L-20"><span class="linenos">20</span></a><span class="kn">from</span> <span class="nn">..generic.v0_3</span> <span class="kn">import</span> <span class="n">Maintainer</span> <span class="k">as</span> <span class="n">Maintainer</span>
@@ -148,7 +148,7 @@ <h1 class="modulename">
 </span><span id="L-47"><a href="#L-47"><span class="linenos">47</span></a><span class="w">    </span><span class="sd">&quot;&quot;&quot;The primary source of the application&quot;&quot;&quot;</span>
 </span><span id="L-48"><a href="#L-48"><span class="linenos">48</span></a>
 </span><span id="L-49"><a href="#L-49"><span class="linenos">49</span></a>
-</span><span id="L-50"><a href="#L-50"><span class="linenos">50</span></a><span class="k">class</span> <span class="nc">LinkedApplication</span><span class="p">(</span><span class="n">LinkedResourceNode</span><span class="p">):</span>
+</span><span id="L-50"><a href="#L-50"><span class="linenos">50</span></a><span class="k">class</span> <span class="nc">LinkedApplication</span><span class="p">(</span><span class="n">LinkedResourceBase</span><span class="p">):</span>
 </span><span id="L-51"><a href="#L-51"><span class="linenos">51</span></a><span class="w">    </span><span class="sd">&quot;&quot;&quot;Reference to a bioimage.io application.&quot;&quot;&quot;</span>
 </span><span id="L-52"><a href="#L-52"><span class="linenos">52</span></a>
 </span><span id="L-53"><a href="#L-53"><span class="linenos">53</span></a>    <span class="nb">id</span><span class="p">:</span> <span class="n">ApplicationId</span>
@@ -271,7 +271,7 @@ <h5>Inherited Members</h5>
                             </div>
                             <div id="ApplicationDescr.source" class="classattr">
                                 <div class="attr variable">
-            <span class="name">source</span><span class="annotation">: Annotated[Optional[Annotated[Union[bioimageio.spec._internal.url.HttpUrl, bioimageio.spec._internal.io.RelativeFilePath, Annotated[pathlib.Path, PathType(path_type=&#39;file&#39;), FieldInfo(annotation=NoneType, required=True, title=&#39;FilePath&#39;)]], FieldInfo(annotation=NoneType, required=True, metadata=[_PydanticGeneralMetadata(union_mode=&#39;left_to_right&#39;)]), AfterValidator(func=&lt;function wo_special_file_name at 0x7f4eadf70040&gt;), PlainSerializer(func=&lt;function _package at 0x7f4eadf707c0&gt;, return_type=PydanticUndefined, when_used=&#39;unless-none&#39;)]], FieldInfo(annotation=NoneType, required=True, description=&#39;URL or path to the source of the application&#39;)]</span>
+            <span class="name">source</span><span class="annotation">: Annotated[Optional[Annotated[Union[bioimageio.spec._internal.url.HttpUrl, bioimageio.spec._internal.io.RelativeFilePath, Annotated[pathlib.Path, PathType(path_type=&#39;file&#39;), FieldInfo(annotation=NoneType, required=True, title=&#39;FilePath&#39;)]], FieldInfo(annotation=NoneType, required=True, metadata=[_PydanticGeneralMetadata(union_mode=&#39;left_to_right&#39;)]), AfterValidator(func=&lt;function wo_special_file_name at 0x7f9662bc4540&gt;), PlainSerializer(func=&lt;function _package at 0x7f9662bc6ca0&gt;, return_type=PydanticUndefined, when_used=&#39;unless-none&#39;)]], FieldInfo(annotation=NoneType, required=True, description=&#39;URL or path to the source of the application&#39;)]</span>
 
 
     </div>
@@ -382,13 +382,13 @@ <h5>Inherited Members</h5>
 <div class="attr class">
 
     <span class="def">class</span>
-    <span class="name">LinkedApplication</span><wbr>(<span class="base"><a href="../generic/v0_3.html#LinkedResourceNode">bioimageio.spec.generic.v0_3.LinkedResourceNode</a></span>):
+    <span class="name">LinkedApplication</span><wbr>(<span class="base"><a href="../generic/v0_3.html#LinkedResourceBase">bioimageio.spec.generic.v0_3.LinkedResourceBase</a></span>):
 
                 <label class="view-source-button" for="LinkedApplication-view-source"><span>View Source</span></label>
 
     </div>
     <a class="headerlink" href="#LinkedApplication"></a>
-            <div class="pdoc-code codehilite"><pre><span></span><span id="LinkedApplication-51"><a href="#LinkedApplication-51"><span class="linenos">51</span></a><span class="k">class</span> <span class="nc">LinkedApplication</span><span class="p">(</span><span class="n">LinkedResourceNode</span><span class="p">):</span>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="LinkedApplication-51"><a href="#LinkedApplication-51"><span class="linenos">51</span></a><span class="k">class</span> <span class="nc">LinkedApplication</span><span class="p">(</span><span class="n">LinkedResourceBase</span><span class="p">):</span>
 </span><span id="LinkedApplication-52"><a href="#LinkedApplication-52"><span class="linenos">52</span></a><span class="w">    </span><span class="sd">&quot;&quot;&quot;Reference to a bioimage.io application.&quot;&quot;&quot;</span>
 </span><span id="LinkedApplication-53"><a href="#LinkedApplication-53"><span class="linenos">53</span></a>
 </span><span id="LinkedApplication-54"><a href="#LinkedApplication-54"><span class="linenos">54</span></a>    <span class="nb">id</span><span class="p">:</span> <span class="n">ApplicationId</span>
@@ -416,8 +416,8 @@ <h5>Inherited Members</h5>
                             <div class="inherited">
                                 <h5>Inherited Members</h5>
                                 <dl>
-                                    <div><dt><a href="../generic/v0_3.html#LinkedResourceNode">bioimageio.spec.generic.v0_3.LinkedResourceNode</a></dt>
-                                <dd id="LinkedApplication.version" class="variable"><a href="../generic/v0_3.html#LinkedResourceNode.version">version</a></dd>
+                                    <div><dt><a href="../generic/v0_3.html#LinkedResourceBase">bioimageio.spec.generic.v0_3.LinkedResourceBase</a></dt>
+                                <dd id="LinkedApplication.version" class="variable"><a href="../generic/v0_3.html#LinkedResourceBase.version">version</a></dd>
 
             </div>
                                 </dl>