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bioimage-io · Nov 12, 2024 · 1223324 · 1223324
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diff --git a/bioimageio/spec.html b/bioimageio/spec.html
@@ -1507,7 +1507,7 @@ <h4 id="model-032">model 0.3.2</h4>
                             </div>
                             <div id="ApplicationDescr.source" class="classattr">
                                 <div class="attr variable">
-            <span class="name">source</span><span class="annotation">: Annotated[Optional[Annotated[Union[bioimageio.spec._internal.url.HttpUrl, bioimageio.spec._internal.io.RelativeFilePath, Annotated[pathlib.Path, PathType(path_type=&#39;file&#39;)]], FieldInfo(annotation=NoneType, required=True, metadata=[_PydanticGeneralMetadata(union_mode=&#39;left_to_right&#39;)]), AfterValidator(func=&lt;function wo_special_file_name at 0x7f98c8013ce0&gt;), PlainSerializer(func=&lt;function _package at 0x7f98c7e4c4a0&gt;, return_type=PydanticUndefined, when_used=&#39;unless-none&#39;)]], FieldInfo(annotation=NoneType, required=True, description=&#39;URL or path to the source of the application&#39;)]</span>
+            <span class="name">source</span><span class="annotation">: Annotated[Optional[Annotated[Union[bioimageio.spec._internal.url.HttpUrl, bioimageio.spec._internal.io.RelativeFilePath, Annotated[pathlib.Path, PathType(path_type=&#39;file&#39;)]], FieldInfo(annotation=NoneType, required=True, metadata=[_PydanticGeneralMetadata(union_mode=&#39;left_to_right&#39;)]), AfterValidator(func=&lt;function wo_special_file_name at 0x7f63806efce0&gt;), PlainSerializer(func=&lt;function _package at 0x7f63805244a0&gt;, return_type=PydanticUndefined, when_used=&#39;unless-none&#39;)]], FieldInfo(annotation=NoneType, required=True, description=&#39;URL or path to the source of the application&#39;)]</span>
 
 
     </div>
@@ -3196,7 +3196,7 @@ <h6 id="returns">Returns:</h6>
                             </div>
                             <div id="ModelDescr.documentation" class="classattr">
                                 <div class="attr variable">
-            <span class="name">documentation</span><span class="annotation">: Annotated[Union[Annotated[pathlib.Path, PathType(path_type=&#39;file&#39;), Predicate(is_absolute)], bioimageio.spec._internal.io.RelativeFilePath, bioimageio.spec._internal.url.HttpUrl], FieldInfo(annotation=NoneType, required=True, metadata=[_PydanticGeneralMetadata(union_mode=&#39;left_to_right&#39;)]), AfterValidator(func=&lt;function _validate_md_suffix at 0x7f98c57cf560&gt;), PlainSerializer(func=&lt;function _package at 0x7f98c7e4c4a0&gt;, return_type=PydanticUndefined, when_used=&#39;unless-none&#39;), FieldInfo(annotation=NoneType, required=True, examples=[&#39;https://raw.githubusercontent.com/bioimage-io/spec-bioimage-io/main/example_descriptions/models/unet2d_nuclei_broad/README.md&#39;, &#39;README.md&#39;])]</span>
+            <span class="name">documentation</span><span class="annotation">: Annotated[Union[Annotated[pathlib.Path, PathType(path_type=&#39;file&#39;), Predicate(is_absolute)], bioimageio.spec._internal.io.RelativeFilePath, bioimageio.spec._internal.url.HttpUrl], FieldInfo(annotation=NoneType, required=True, metadata=[_PydanticGeneralMetadata(union_mode=&#39;left_to_right&#39;)]), AfterValidator(func=&lt;function _validate_md_suffix at 0x7f637e3cf560&gt;), PlainSerializer(func=&lt;function _package at 0x7f63805244a0&gt;, return_type=PydanticUndefined, when_used=&#39;unless-none&#39;), FieldInfo(annotation=NoneType, required=True, examples=[&#39;https://raw.githubusercontent.com/bioimage-io/spec-bioimage-io/main/example_descriptions/models/unet2d_nuclei_broad/README.md&#39;, &#39;README.md&#39;])]</span>
 
 
     </div>
@@ -3225,7 +3225,7 @@ <h6 id="returns">Returns:</h6>
                             </div>
                             <div id="ModelDescr.name" class="classattr">
                                 <div class="attr variable">
-            <span class="name">name</span><span class="annotation">: Annotated[str, RestrictCharacters(alphabet=&#39;abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789_- ()&#39;), MinLen(min_length=5), MaxLen(max_length=128), AfterWarner(func=&lt;function as_warning.&lt;locals&gt;.wrapper at 0x7f98bb49a840&gt;, severity=20, msg=&#39;Name longer than 64 characters.&#39;, context={&#39;typ&#39;: Annotated[Any, MaxLen(max_length=64)]})]</span>
+            <span class="name">name</span><span class="annotation">: Annotated[str, RestrictCharacters(alphabet=&#39;abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789_- ()&#39;), MinLen(min_length=5), MaxLen(max_length=128), AfterWarner(func=&lt;function as_warning.&lt;locals&gt;.wrapper at 0x7f6373b9a840&gt;, severity=20, msg=&#39;Name longer than 64 characters.&#39;, context={&#39;typ&#39;: Annotated[Any, MaxLen(max_length=64)]})]</span>
 
 
     </div>
@@ -3281,7 +3281,7 @@ <h6 id="returns">Returns:</h6>
                             </div>
                             <div id="ModelDescr.run_mode" class="classattr">
                                 <div class="attr variable">
-            <span class="name">run_mode</span><span class="annotation">: Annotated[Optional[<a href="spec/model/v0_4.html#RunMode">bioimageio.spec.model.v0_4.RunMode</a>], AfterWarner(func=&lt;function as_warning.&lt;locals&gt;.wrapper at 0x7f98bb49aca0&gt;, severity=30, msg=&#34;Run mode &#39;{value}&#39; has limited support across consumer softwares.&#34;, context={&#39;typ&#39;: None})]</span>
+            <span class="name">run_mode</span><span class="annotation">: Annotated[Optional[<a href="spec/model/v0_4.html#RunMode">bioimageio.spec.model.v0_4.RunMode</a>], AfterWarner(func=&lt;function as_warning.&lt;locals&gt;.wrapper at 0x7f6373b9aca0&gt;, severity=30, msg=&#34;Run mode &#39;{value}&#39; has limited support across consumer softwares.&#34;, context={&#39;typ&#39;: None})]</span>
 
 
     </div>
@@ -3324,7 +3324,7 @@ <h6 id="returns">Returns:</h6>
                             </div>
                             <div id="ModelDescr.weights" class="classattr">
                                 <div class="attr variable">
-            <span class="name">weights</span><span class="annotation">: Annotated[<a href="spec/model/v0_5.html#WeightsDescr">bioimageio.spec.model.v0_5.WeightsDescr</a>, WrapSerializer(func=&lt;function package_weights at 0x7f98bc1a9e40&gt;, return_type=PydanticUndefined, when_used=&#39;always&#39;)]</span>
+            <span class="name">weights</span><span class="annotation">: Annotated[<a href="spec/model/v0_5.html#WeightsDescr">bioimageio.spec.model.v0_5.WeightsDescr</a>, WrapSerializer(func=&lt;function package_weights at 0x7f63748a5e40&gt;, return_type=PydanticUndefined, when_used=&#39;always&#39;)]</span>
 
 
     </div>

diff --git a/bioimageio/spec/application.html b/bioimageio/spec/application.html
@@ -202,7 +202,7 @@ <h1 class="modulename">
                             </div>
                             <div id="ApplicationDescr.source" class="classattr">
                                 <div class="attr variable">
-            <span class="name">source</span><span class="annotation">: Annotated[Optional[Annotated[Union[bioimageio.spec._internal.url.HttpUrl, bioimageio.spec._internal.io.RelativeFilePath, Annotated[pathlib.Path, PathType(path_type=&#39;file&#39;)]], FieldInfo(annotation=NoneType, required=True, metadata=[_PydanticGeneralMetadata(union_mode=&#39;left_to_right&#39;)]), AfterValidator(func=&lt;function wo_special_file_name at 0x7f98c8013ce0&gt;), PlainSerializer(func=&lt;function _package at 0x7f98c7e4c4a0&gt;, return_type=PydanticUndefined, when_used=&#39;unless-none&#39;)]], FieldInfo(annotation=NoneType, required=True, description=&#39;URL or path to the source of the application&#39;)]</span>
+            <span class="name">source</span><span class="annotation">: Annotated[Optional[Annotated[Union[bioimageio.spec._internal.url.HttpUrl, bioimageio.spec._internal.io.RelativeFilePath, Annotated[pathlib.Path, PathType(path_type=&#39;file&#39;)]], FieldInfo(annotation=NoneType, required=True, metadata=[_PydanticGeneralMetadata(union_mode=&#39;left_to_right&#39;)]), AfterValidator(func=&lt;function wo_special_file_name at 0x7f63806efce0&gt;), PlainSerializer(func=&lt;function _package at 0x7f63805244a0&gt;, return_type=PydanticUndefined, when_used=&#39;unless-none&#39;)]], FieldInfo(annotation=NoneType, required=True, description=&#39;URL or path to the source of the application&#39;)]</span>
 
 
     </div>

diff --git a/bioimageio/spec/application/v0_2.html b/bioimageio/spec/application/v0_2.html
@@ -248,7 +248,7 @@ <h5>Inherited Members</h5>
                             </div>
                             <div id="ApplicationDescr.source" class="classattr">
                                 <div class="attr variable">
-            <span class="name">source</span><span class="annotation">: Annotated[Optional[Annotated[Union[bioimageio.spec._internal.url.HttpUrl, bioimageio.spec._internal.io.RelativeFilePath, Annotated[pathlib.Path, PathType(path_type=&#39;file&#39;)]], FieldInfo(annotation=NoneType, required=True, metadata=[_PydanticGeneralMetadata(union_mode=&#39;left_to_right&#39;)]), AfterValidator(func=&lt;function wo_special_file_name at 0x7f98c8013ce0&gt;), PlainSerializer(func=&lt;function _package at 0x7f98c7e4c4a0&gt;, return_type=PydanticUndefined, when_used=&#39;unless-none&#39;)]], FieldInfo(annotation=NoneType, required=True, description=&#39;URL or path to the source of the application&#39;)]</span>
+            <span class="name">source</span><span class="annotation">: Annotated[Optional[Annotated[Union[bioimageio.spec._internal.url.HttpUrl, bioimageio.spec._internal.io.RelativeFilePath, Annotated[pathlib.Path, PathType(path_type=&#39;file&#39;)]], FieldInfo(annotation=NoneType, required=True, metadata=[_PydanticGeneralMetadata(union_mode=&#39;left_to_right&#39;)]), AfterValidator(func=&lt;function wo_special_file_name at 0x7f63806efce0&gt;), PlainSerializer(func=&lt;function _package at 0x7f63805244a0&gt;, return_type=PydanticUndefined, when_used=&#39;unless-none&#39;)]], FieldInfo(annotation=NoneType, required=True, description=&#39;URL or path to the source of the application&#39;)]</span>
 
 
     </div>

diff --git a/bioimageio/spec/application/v0_3.html b/bioimageio/spec/application/v0_3.html
@@ -265,7 +265,7 @@ <h5>Inherited Members</h5>
                             </div>
                             <div id="ApplicationDescr.source" class="classattr">
                                 <div class="attr variable">
-            <span class="name">source</span><span class="annotation">: Annotated[Optional[Annotated[Union[bioimageio.spec._internal.url.HttpUrl, bioimageio.spec._internal.io.RelativeFilePath, Annotated[pathlib.Path, PathType(path_type=&#39;file&#39;)]], FieldInfo(annotation=NoneType, required=True, metadata=[_PydanticGeneralMetadata(union_mode=&#39;left_to_right&#39;)]), AfterValidator(func=&lt;function wo_special_file_name at 0x7f98c8013ce0&gt;), PlainSerializer(func=&lt;function _package at 0x7f98c7e4c4a0&gt;, return_type=PydanticUndefined, when_used=&#39;unless-none&#39;)]], FieldInfo(annotation=NoneType, required=True, description=&#39;URL or path to the source of the application&#39;)]</span>
+            <span class="name">source</span><span class="annotation">: Annotated[Optional[Annotated[Union[bioimageio.spec._internal.url.HttpUrl, bioimageio.spec._internal.io.RelativeFilePath, Annotated[pathlib.Path, PathType(path_type=&#39;file&#39;)]], FieldInfo(annotation=NoneType, required=True, metadata=[_PydanticGeneralMetadata(union_mode=&#39;left_to_right&#39;)]), AfterValidator(func=&lt;function wo_special_file_name at 0x7f63806efce0&gt;), PlainSerializer(func=&lt;function _package at 0x7f63805244a0&gt;, return_type=PydanticUndefined, when_used=&#39;unless-none&#39;)]], FieldInfo(annotation=NoneType, required=True, description=&#39;URL or path to the source of the application&#39;)]</span>
 
 
     </div>

diff --git a/bioimageio/spec/common.html b/bioimageio/spec/common.html
@@ -335,7 +335,7 @@ <h1 class="modulename">
 
                             <div id="FileDescr.source" class="classattr">
                                 <div class="attr variable">
-            <span class="name">source</span><span class="annotation">: Annotated[Union[<a href="#HttpUrl">HttpUrl</a>, <a href="#RelativeFilePath">RelativeFilePath</a>, Annotated[pathlib.Path, PathType(path_type=&#39;file&#39;)]], FieldInfo(annotation=NoneType, required=True, metadata=[_PydanticGeneralMetadata(union_mode=&#39;left_to_right&#39;)]), AfterValidator(func=&lt;function wo_special_file_name at 0x7f98c8013ce0&gt;), PlainSerializer(func=&lt;function _package at 0x7f98c7e4c4a0&gt;, return_type=PydanticUndefined, when_used=&#39;unless-none&#39;)]</span>
+            <span class="name">source</span><span class="annotation">: Annotated[Union[<a href="#HttpUrl">HttpUrl</a>, <a href="#RelativeFilePath">RelativeFilePath</a>, Annotated[pathlib.Path, PathType(path_type=&#39;file&#39;)]], FieldInfo(annotation=NoneType, required=True, metadata=[_PydanticGeneralMetadata(union_mode=&#39;left_to_right&#39;)]), AfterValidator(func=&lt;function wo_special_file_name at 0x7f63806efce0&gt;), PlainSerializer(func=&lt;function _package at 0x7f63805244a0&gt;, return_type=PydanticUndefined, when_used=&#39;unless-none&#39;)]</span>
 
 
     </div>