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bioimageio.core.contrib #316

Closed
wants to merge 24 commits into from
Closed

bioimageio.core.contrib #316

wants to merge 24 commits into from

Commits on Oct 31, 2022

  1. clean up nodes and add Workflow

    @FynnBe
    FynnBe committed Oct 31, 2022
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Commits on Nov 4, 2022

  1. update workflow nodes

    @FynnBe
    FynnBe committed Nov 4, 2022
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  2. allow for node defaults 

    (don't init with missing)
    @FynnBe
    FynnBe committed Nov 4, 2022
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  3. make image_helper agnostic to axis letter vs name

    @FynnBe
    FynnBe committed Nov 4, 2022
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  4. accept pathlib.Path in save_image

    @FynnBe
    FynnBe committed Nov 4, 2022
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  5. fix nodes

    @FynnBe
    FynnBe committed Nov 4, 2022
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  6. add cli command run

    @FynnBe
    FynnBe committed Nov 4, 2022
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  7. add workflow operators

    @FynnBe
    FynnBe committed Nov 4, 2022
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Commits on Nov 8, 2022

  1. add iterate_workflow_steps and iterate_test_workflow_steps

    @FynnBe
    FynnBe committed Nov 8, 2022
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Commits on Nov 10, 2022

  1. Merge branch 'workflow_rdf' into predict_w_dask_overlap

    @FynnBe
    FynnBe committed Nov 10, 2022
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Commits on Nov 15, 2022

  1. wip run_model_inference_with_chunking

    @FynnBe
    FynnBe committed Nov 15, 2022
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  2. correct output chunks

    @FynnBe
    FynnBe committed Nov 15, 2022
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  3. impl pre/postprocessing

    @FynnBe
    FynnBe committed Nov 15, 2022
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Commits on Nov 16, 2022

  1. clean up

    @FynnBe
    FynnBe committed Nov 16, 2022
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Commits on Nov 17, 2022

  1. draft bioimageio.core.contrib

    @FynnBe
    FynnBe committed Nov 17, 2022
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  2. add example use_contrib.py

    @FynnBe
    FynnBe committed Nov 17, 2022
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Commits on Nov 24, 2022

  1. ignore mypy cache folder

    @FynnBe
    FynnBe committed Nov 24, 2022
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  2. update various

    @FynnBe
    FynnBe committed Nov 24, 2022
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  3. add script generate_workflow_rdfs.py

    @FynnBe
    FynnBe committed Nov 24, 2022
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Commits on Nov 28, 2022

  1. start workflow cleanup

    @FynnBe
    FynnBe committed Nov 28, 2022
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  2. bump patch version

    @FynnBe
    FynnBe committed Nov 28, 2022
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  3. remove contrib module

    @FynnBe
    FynnBe committed Nov 28, 2022
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  4. set default Axis name to axis type

    @FynnBe
    FynnBe committed Nov 28, 2022
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  5. fix Workflow node

    @FynnBe
    FynnBe committed Nov 28, 2022
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