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FynnBe committed Nov 18, 2024
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18 changes: 18 additions & 0 deletions README.md
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Expand Up @@ -375,6 +375,24 @@ The model specification and its validation tools can be found at <https://github

## Changelog

### 0.7.0

- breaking:
- bioimageio CLI now has implicit boolean flags
- non-breaking:
- use new `ValidationDetail.recommended_env` in `ValidationSummary`
- improve `get_io_sample_block_metas()`
- now works for sufficiently large, but not exactly shaped inputs
- update to support `zipfile.ZipFile` object with bioimageio.spec==0.5.3.5
- add io helpers `resolve` and `resolve_and_extract`
- added `enable_determinism` function and **determinism** input argument for testing with seeded
random generators and optionally (determinsim=="full") instructing DL frameworks to use
deterministic algorithms.

### 0.6.10

- fix #423

### 0.6.9

- improve bioimageio command line interface (details in #157)
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<header>
<div class="content">
<h1>Coverage report:
<span class="pc_cov">63%</span>
<span class="pc_cov">73%</span>
</h1>
<aside id="help_panel_wrapper">
<input id="help_panel_state" type="checkbox">
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<a class="button" href="class_index.html">Classes</a>
</h2>
<p class="text">
<a class="nav" href="https://coverage.readthedocs.io/en/7.6.4">coverage.py v7.6.4</a>,
created at 2024-11-08 13:19 +0000
<a class="nav" href="https://coverage.readthedocs.io/en/7.6.7">coverage.py v7.6.7</a>,
created at 2024-11-18 23:36 +0000
</p>
</div>
</header>
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<tr class="region">
<td class="name left"><a href="z_26936cb883974160___init___py.html">bioimageio/core/__init__.py</a></td>
<td>19</td>
<td>22</td>
<td>0</td>
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<td class="right" data-ratio="19 19">100%</td>
<td class="right" data-ratio="22 22">100%</td>
</tr>
<tr class="region">
<td class="name left"><a href="z_26936cb883974160___main___py.html">bioimageio/core/__main__.py</a></td>
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<tr class="region">
<td class="name left"><a href="z_26936cb883974160__prediction_pipeline_py.html">bioimageio/core/_prediction_pipeline.py</a></td>
<td>115</td>
<td>37</td>
<td>0</td>
<td class="right" data-ratio="78 115">68%</td>
<td>114</td>
<td>12</td>
<td>1</td>
<td class="right" data-ratio="102 114">89%</td>
</tr>
<tr class="region">
<td class="name left"><a href="z_26936cb883974160__resource_tests_py.html">bioimageio/core/_resource_tests.py</a></td>
<td>131</td>
<td>28</td>
<td>169</td>
<td>43</td>
<td>0</td>
<td class="right" data-ratio="103 131">79%</td>
<td class="right" data-ratio="126 169">75%</td>
</tr>
<tr class="region">
<td class="name left"><a href="z_26936cb883974160__settings_py.html">bioimageio/core/_settings.py</a></td>
<td>9</td>
<td>10</td>
<td>0</td>
<td>0</td>
<td class="right" data-ratio="9 9">100%</td>
<td class="right" data-ratio="10 10">100%</td>
</tr>
<tr class="region">
<td class="name left"><a href="z_26936cb883974160_axis_py.html">bioimageio/core/axis.py</a></td>
<td>64</td>
<td>13</td>
<td>0</td>
<td class="right" data-ratio="51 64">80%</td>
<td>62</td>
<td>11</td>
<td>2</td>
<td class="right" data-ratio="51 62">82%</td>
</tr>
<tr class="region">
<td class="name left"><a href="z_26936cb883974160_block_py.html">bioimageio/core/block.py</a></td>
<td>35</td>
<td>14</td>
<td>5</td>
<td>0</td>
<td class="right" data-ratio="21 35">60%</td>
<td class="right" data-ratio="30 35">86%</td>
</tr>
<tr class="region">
<td class="name left"><a href="z_26936cb883974160_block_meta_py.html">bioimageio/core/block_meta.py</a></td>
<td>123</td>
<td>73</td>
<td>126</td>
<td>20</td>
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<td class="right" data-ratio="50 123">41%</td>
<td class="right" data-ratio="106 126">84%</td>
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<tr class="region">
<td class="name left"><a href="z_26936cb883974160_cli_py.html">bioimageio/core/cli.py</a></td>
<td>265</td>
<td>154</td>
<td>0</td>
<td class="right" data-ratio="111 265">42%</td>
<td>272</td>
<td>55</td>
<td>1</td>
<td class="right" data-ratio="217 272">80%</td>
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<tr class="region">
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<td>29</td>
<td>7</td>
<td>5</td>
<td>0</td>
<td class="right" data-ratio="22 29">76%</td>
<td class="right" data-ratio="24 29">83%</td>
</tr>
<tr class="region">
<td class="name left"><a href="z_26936cb883974160_common_py.html">bioimageio/core/common.py</a></td>
<td>47</td>
<td>2</td>
<td>46</td>
<td>0</td>
<td class="right" data-ratio="45 47">96%</td>
<td>1</td>
<td class="right" data-ratio="46 46">100%</td>
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<tr class="region">
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<tr class="region">
<td class="name left"><a href="z_26936cb883974160_digest_spec_py.html">bioimageio/core/digest_spec.py</a></td>
<td>171</td>
<td>57</td>
<td>0</td>
<td class="right" data-ratio="114 171">67%</td>
<td>162</td>
<td>17</td>
<td>4</td>
<td class="right" data-ratio="145 162">90%</td>
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<tr class="region">
<td class="name left"><a href="z_26936cb883974160_io_py.html">bioimageio/core/io.py</a></td>
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<td>25</td>
<td>86</td>
<td>11</td>
<td>0</td>
<td class="right" data-ratio="25 50">50%</td>
<td class="right" data-ratio="75 86">87%</td>
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<tr class="region">
<td class="name left"><a href="z_c56552f84a37ab97___init___py.html">bioimageio/core/model_adapters/__init__.py</a></td>
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<td>12</td>
<td>11</td>
<td>0</td>
<td class="right" data-ratio="55 67">82%</td>
<td class="right" data-ratio="56 67">84%</td>
</tr>
<tr class="region">
<td class="name left"><a href="z_c56552f84a37ab97__tensorflow_model_adapter_py.html">bioimageio/core/model_adapters/_tensorflow_model_adapter.py</a></td>
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<tr class="region">
<td class="name left"><a href="z_26936cb883974160_prediction_py.html">bioimageio/core/prediction.py</a></td>
<td>63</td>
<td>44</td>
<td>26</td>
<td>0</td>
<td class="right" data-ratio="19 63">30%</td>
<td class="right" data-ratio="37 63">59%</td>
</tr>
<tr class="region">
<td class="name left"><a href="z_26936cb883974160_proc_ops_py.html">bioimageio/core/proc_ops.py</a></td>
<td>328</td>
<td>81</td>
<td>0</td>
<td class="right" data-ratio="247 328">75%</td>
<td>321</td>
<td>74</td>
<td>7</td>
<td class="right" data-ratio="247 321">77%</td>
</tr>
<tr class="region">
<td class="name left"><a href="z_26936cb883974160_proc_setup_py.html">bioimageio/core/proc_setup.py</a></td>
<td>84</td>
<td>14</td>
<td>0</td>
<td class="right" data-ratio="70 84">83%</td>
<td>82</td>
<td>11</td>
<td>1</td>
<td class="right" data-ratio="71 82">87%</td>
</tr>
<tr class="region">
<td class="name left"><a href="z_26936cb883974160_sample_py.html">bioimageio/core/sample.py</a></td>
<td>114</td>
<td>48</td>
<td>115</td>
<td>7</td>
<td>0</td>
<td class="right" data-ratio="66 114">58%</td>
<td class="right" data-ratio="108 115">94%</td>
</tr>
<tr class="region">
<td class="name left"><a href="z_26936cb883974160_stat_calculators_py.html">bioimageio/core/stat_calculators.py</a></td>
<td>322</td>
<td>114</td>
<td>0</td>
<td class="right" data-ratio="208 322">65%</td>
<td>321</td>
<td>113</td>
<td>1</td>
<td class="right" data-ratio="208 321">65%</td>
</tr>
<tr class="region">
<td class="name left"><a href="z_26936cb883974160_stat_measures_py.html">bioimageio/core/stat_measures.py</a></td>
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</tr>
<tr class="region">
<td class="name left"><a href="z_26936cb883974160_tensor_py.html">bioimageio/core/tensor.py</a></td>
<td>225</td>
<td>61</td>
<td>0</td>
<td class="right" data-ratio="164 225">73%</td>
<td>221</td>
<td>53</td>
<td>4</td>
<td class="right" data-ratio="168 221">76%</td>
</tr>
<tr class="region">
<td class="name left"><a href="z_1c9984a0493eef95___init___py.html">bioimageio/core/utils/__init__.py</a></td>
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</tr>
<tr class="region">
<td class="name left"><a href="z_9c23042445a2a752__torchscript_py.html">bioimageio/core/weight_converter/torch/_torchscript.py</a></td>
<td>74</td>
<td>62</td>
<td>0</td>
<td class="right" data-ratio="12 74">16%</td>
<td>73</td>
<td>61</td>
<td>1</td>
<td class="right" data-ratio="12 73">16%</td>
</tr>
<tr class="region">
<td class="name left"><a href="z_9c23042445a2a752__utils_py.html">bioimageio/core/weight_converter/torch/_utils.py</a></td>
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<tfoot>
<tr class="total">
<td class="name left">Total</td>
<td>3101</td>
<td>1153</td>
<td>0</td>
<td class="right" data-ratio="1948 3101">63%</td>
<td>3162</td>
<td>842</td>
<td>23</td>
<td class="right" data-ratio="2320 3162">73%</td>
</tr>
</tfoot>
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<footer>
<div class="content">
<p>
<a class="nav" href="https://coverage.readthedocs.io/en/7.6.4">coverage.py v7.6.4</a>,
created at 2024-11-08 13:19 +0000
<a class="nav" href="https://coverage.readthedocs.io/en/7.6.7">coverage.py v7.6.7</a>,
created at 2024-11-18 23:36 +0000
</p>
</div>
<aside class="hidden">
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