preprocess the inputs

bioimage-io · Jan 14, 2025 · d8ea1f9 · d8ea1f9
1 parent ece1b5e
commit d8ea1f9
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/src/main/java/io/bioimage/modelrunner/model/Stardist3D.java b/src/main/java/io/bioimage/modelrunner/model/Stardist3D.java
@@ -48,6 +48,7 @@
 import io.bioimage.modelrunner.exceptions.LoadEngineException;
 import io.bioimage.modelrunner.exceptions.LoadModelException;
 import io.bioimage.modelrunner.exceptions.RunModelException;
+import io.bioimage.modelrunner.model.processing.Processing;
 import io.bioimage.modelrunner.runmode.RunMode;
 import io.bioimage.modelrunner.runmode.ops.GenericOp;
 import io.bioimage.modelrunner.tensor.Tensor;
@@ -244,6 +245,8 @@ RandomAccessibleInterval<T> predict(RandomAccessibleInterval<T> image) throws Mo
 
 		Model model = Model.createBioimageioModel(this.descriptor.getModelPath());
 		model.loadModel();
+		Processing processing = Processing.init(descriptor);
+		inputList = processing.preprocess(inputList, false);
 		model.runModel(inputList, outputList);
 
 		return Utils.transpose(Cast.unchecked(postProcessing(outputList.get(0).getData())));