Generate taxa by summary data #208
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
|
Getting the same odd error as #207 but the rest is passing. |
squirrelo
force-pushed
the
generate-taxa-by-summary
branch
2 times, most recently
from
c88dce0
to
c6ced91
Compare
squirrelo
force-pushed
the
generate-taxa-by-summary
branch
from
c6ced91
to
284613d
Compare
|
Ready for review |
|
Ping @EmbrietteH @wasade @jwdebelius for review. |
|
I think it's good now regenerating what's in the static plot; in the future we may want to revisit adding capability to choose more categories... |
| """ | ||
| paths = copy(agenv.paths['collapsed']['notrim']['1k']) | ||
| out_dir = get_existing_path( | ||
| agenv.path['populated-templates']['result-taxa']) |
squirrelo
force-pushed
the
generate-taxa-by-summary
branch
from
aeead05
to
5c2da8a
Compare
squirrelo
force-pushed
the
generate-taxa-by-summary
branch
from
d9f6019
to
1eb39c8
Compare
|
Comments addressed, ready to go. |
|
Couple of small comments, 👍 otherwise |
|
png @ekopylova |
|
Thanks, looks good! |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This is the first of a few PRs to generate the needed data for interactivity on the american gut site.
This PR generates the taxa summaries for each of the summary metadata categories we have (bmi, age, etc) that are generated for the static plot.