skder & skani: add linux-aarch64 build

[martin-g]

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[martin-g]

@BiocondaBot please fetch artifacts

[BiocondaBot]

Package(s) built are ready for inspection:

Arch	Package	Zip File / Repodata	CI	Instructions
linux-64	skani-0.2.1-h919a2d8_1.tar.bz2	LinuxArtifacts.zip	Azure	show You may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
linux-64	skder-1.2.1-py310h84f13bb_1.tar.bz2	LinuxArtifacts.zip	Azure	show You may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
linux-64	skder-1.2.1-py311h2a4ad6c_1.tar.bz2	LinuxArtifacts.zip	Azure	show You may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
linux-64	skder-1.2.1-py312h28adbb1_1.tar.bz2	LinuxArtifacts.zip	Azure	show You may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
osx-64	skani-0.2.1-hfd5405d_1.tar.bz2	OSXArtifacts.zip	Azure	show You may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
osx-64	skder-1.2.1-py310h413c500_1.tar.bz2	OSXArtifacts.zip	Azure	show You may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
osx-64	skder-1.2.1-py311hc04bfe9_1.tar.bz2	OSXArtifacts.zip	Azure	show You may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
osx-64	skder-1.2.1-py312h979fc42_1.tar.bz2	OSXArtifacts.zip	Azure	show You may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
linux-aarch64	skani-0.2.1-h2c59f48_1.tar.bz2	repodata.json	CircleCI	show You may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/e731538f-dfc3-4735-9c08-648916ae0bdc/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64	skder-1.2.1-py310ha2e58cd_1.tar.bz2	repodata.json	CircleCI	show You may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/e731538f-dfc3-4735-9c08-648916ae0bdc/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64	skder-1.2.1-py311he45c0d9_1.tar.bz2	repodata.json	CircleCI	show You may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/e731538f-dfc3-4735-9c08-648916ae0bdc/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64	skder-1.2.1-py312hbd5ab74_1.tar.bz2	repodata.json	CircleCI	show You may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/e731538f-dfc3-4735-9c08-648916ae0bdc/artifacts/0/tmp/artifacts/packages <package name>

---

Docker image(s) built:

Package	Tag	CI	Install with docker
skani	0.2.1--h919a2d8_1	Azure	show Images for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/skani:0.2.1--h919a2d8_1.tar.gz | docker load
skder	1.2.1--py310h84f13bb_1	Azure	show Images for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/skder:1.2.1--py310h84f13bb_1.tar.gz | docker load
skder	1.2.1--py311h2a4ad6c_1	Azure	show Images for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/skder:1.2.1--py311h2a4ad6c_1.tar.gz | docker load
skder	1.2.1--py312h28adbb1_1	Azure	show Images for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/skder:1.2.1--py312h28adbb1_1.tar.gz | docker load

[martin-g]

mgrigorov in 🌐 euler-arm-22 in /tmp/skder/skani via 🅒 test123 took 3s 
❯ tar xvf skani-0.2.1-h2c59f48_1.tar.bz2                                                                                                                                                                   (test123) 
info/test/run_test.sh
info/run_exports.json
info/files
info/hash_input.json
info/index.json
info/recipe/build.sh
info/paths.json
info/recipe/meta.yaml.template
info/recipe/meta.yaml
info/recipe/conda_build_config.yaml
info/about.json
info/git
.crates.toml
.crates2.json
bin/skani

mgrigorov in 🌐 euler-arm-22 in /tmp/skder/skani via 🅒 test123 
❯ file bin/*                                                                                                                                                                                               (test123) 
bin/skani: ELF 64-bit LSB pie executable, ARM aarch64, version 1 (SYSV), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, not stripped

mgrigorov in 🌐 euler-arm-22 in /tmp/skder/skani via 🅒 test123 
❯ ./bin/skani                                                                                                                                                                                              (test123) 
skani 0.2.1
fast, robust ANI calculation and database searching for metagenomic contigs and assemblies.

Quick ANI calculation:
skani dist genome1.fa genome2.fa

Memory-efficient database search:
skani sketch genomes/* -o database; skani search -d database query1.fa query2.fa ...

All-to-all comparison:
skani triangle genomes/*

USAGE:
    skani [SUBCOMMAND]

OPTIONS:
    -h, --help       Print help information
    -V, --version    Print version information

SUBCOMMANDS:
    dist        Compute ANI for queries against references fasta files or pre-computed sketch
                    files.
                    Usage: skani dist query.fa ref1.fa ref2.fa ... or use -q/--ql and -r/--rl
                    options.
    search      Search queries against a large pre-sketched database of reference genomes in a
                    memory efficient manner.
                    Usage: skani search -d sketch_folder query1.fa query2.fa ...
    sketch      Sketch (index) genomes.
                    Usage: skani sketch genome1.fa genome2.fa ... -o new_sketch_folder
    triangle    Compute a lower triangular ANI/AF matrix.
                    Usage: skani triangle genome1.fa genome2.fa genome3.fa ...

mgrigorov in 🌐 euler-arm-22 in /tmp/skder via 🅒 test123 took 3s 
❯ tar xvf skder-1.2.1-py310ha2e58cd_1.tar.bz2                                                                                                                                                              (test123) 
info/test/run_test.sh
info/run_exports.json
info/hash_input.json
info/recipe/build.sh
info/has_prefix
info/index.json
info/files
info/recipe/meta.yaml.template
info/licenses/LICENSE
info/recipe/meta.yaml
info/paths.json
info/recipe/conda_build_config.yaml
info/about.json
info/git
lib/python3.10/site-packages/skDER/util.py
lib/python3.10/site-packages/skDER/__init__.py
lib/python3.10/site-packages/skDER-1.2.1.dist-info/top_level.txt
lib/python3.10/site-packages/skDER-1.2.1.dist-info/INSTALLER
lib/python3.10/site-packages/skDER-1.2.1.dist-info/WHEEL
lib/python3.10/site-packages/skDER-1.2.1.dist-info/METADATA
lib/python3.10/site-packages/skDER-1.2.1.dist-info/RECORD
lib/python3.10/site-packages/skDER-1.2.1.dist-info/LICENSE
lib/python3.10/site-packages/skDER-1.2.1.dist-info/REQUESTED
lib/python3.10/site-packages/skDER/__pycache__/__init__.cpython-310.pyc
lib/python3.10/site-packages/skDER/__pycache__/util.cpython-310.pyc
lib/python3.10/site-packages/skDER-1.2.1.dist-info/direct_url.json
bin/cidder
bin/skder
bin/skDERcore
bin/skDERsum

mgrigorov in 🌐 euler-arm-22 in /tmp/skder via 🅒 test123 
❯ file bin/*                                                                                                                                                                                               (test123) 
bin/cidder:    a /opt/conda/conda-bld/skder_1719991480607/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold script, ASCII text executable, with very long lines (372)
bin/skder:     a /opt/conda/conda-bld/skder_1719991480607/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold script, ASCII text executable
bin/skDERcore: ELF 64-bit LSB pie executable, ARM aarch64, version 1 (SYSV), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, not stripped
bin/skDERsum:  ELF 64-bit LSB pie executable, ARM aarch64, version 1 (SYSV), dynamically linked, interpreter /lib/ld-linux-aarch64.so.1, for GNU/Linux 3.7.0, not stripped

mgrigorov in 🌐 euler-arm-22 in /tmp/skder via 🅒 test123 
❯ ./bin/skDERsum                                                                                                                                                                                           (test123) 
Usage:
skDERsum <skani triangle edge listing file> <n50 listing file> <min ANI> <min AF>

LGTM!

[martin-g]

@BiocondaBot please add label