Merge pull request #2 from biocad/develop

version 0.1.0.2: BioSources added

CHANGELOG.md

@@ -6,6 +6,10 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
 
 ## [Unreleased]
 
+## [0.1.0.2] - 2018-03-19
+### Added
+- Data for `bio-sources` library.
+
 ## [0.1.0.1] - 2018-03-05
 ### Changed
 - Class name for get config from JSON. Now it is `FromJsonConfig` with method `fromJsonConfig :: MonadIO m => m a`.

bcd-config.cabal

@@ -1,5 +1,5 @@
 name:           bcd-config
-version:        0.1.0.1
+version:        0.1.0.2
 description:    Library to get config to different systems
 homepage:       https://github.com/biocad/bcd-config#readme
 bug-reports:    https://github.com/biocad/bcd-config/issues
@@ -31,6 +31,7 @@ library
                   , System.BCD.Config.Postgres
                   , System.BCD.Config.Schrodinger
                   , System.BCD.Config.FileSystem
+                  , System.BCD.Config.BioSources
   build-depends:    base >=4.7 && <5
                   , text
                   , unordered-containers

src/System/BCD/Config/BioSources.hs

@@ -0,0 +1,21 @@
+{-# LANGUAGE OverloadedStrings #-}
+
+module System.BCD.Config.BioSources
+  ( BioSourcesConfig (..)
+  , FromJsonConfig (..)
+  ) where
+
+import           Data.Aeson.Picker   ((|--))
+import           System.BCD.Config   (FromJsonConfig (..), getConfigText)
+
+-- | This class contains information where to find files that are related to
+-- semantic common used library [bio-sources](https://github.com/biocad/bio-sources).
+-- That library includes dihedral angles, kmers, ideal aminoacids and functions to work with them.
+newtype BioSourcesConfig = BioSourcesConfig { bioSourcesPath :: FilePath }
+  deriving (Show, Read, Eq)
+
+instance FromJsonConfig BioSourcesConfig where
+  fromJsonConfig = do
+      jsonText <- getConfigText    
+      let path = jsonText |-- ["deploy", "fs", "bio-sources"]
+      pure $ BioSourcesConfig path

stack.yaml

@@ -15,8 +15,7 @@ packages:
 - '.'
 
 # necessary extra-deps that are not included in the BCD-LTS
-extra-deps:
-- aeson-picker-0.1.0.2
+extra-deps: []
 
 # https://github.com/commercialhaskell/stack/issues/3520
 ignore-revision-mismatch: true