Move data to brick dir

biobricks-ai · Dec 27, 2023 · 819c11c · 819c11c
1 parent da0ef10
commit 819c11c
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Showing 3 changed files with 8 additions and 7 deletions.
diff --git a/dvc.lock b/dvc.lock
@@ -1,14 +1,15 @@
 schema: '2.0'
 stages:
   to-parquet:
-    cmd: clj -X biobricks.ecotox/build-parquet '{:db "data/ecotox_ascii" :output "data/ecotox_parquet"}'
+    cmd: clj -X biobricks.ecotox/build-parquet '{:db "data/ecotox_ascii" :output "brick"}'
     deps:
     - path: data/ecotox_ascii
       md5: 3c1d6016fd057c38a9d5690fcf300c6a.dir
       size: 2322245817
       nfiles: 51
     outs:
-    - path: data/ecotox_parquet
-      md5: 4debb30e4bf026e8d00226726d7a0c5c.dir
-      size: 3768141088
+    - path: brick
+      hash: md5
+      md5: a64c66ade4f0eefc2651bf7b03fb3d79.dir
+      size: 3768405317
       nfiles: 48
diff --git a/dvc.yaml b/dvc.yaml
@@ -2,8 +2,8 @@
 # see https://dvc.org/doc/user-guide/project-structure/dvcyaml-files#pipelines-files-dvcyaml
 stages:
   to-parquet:
-    cmd: clj -X biobricks.ecotox/build-parquet '{:db "data/ecotox_ascii" :output "data/ecotox_parquet"}'
+    cmd: clj -X biobricks.ecotox/build-parquet '{:db "data/ecotox_ascii" :output "brick"}'
     deps:
       - data/ecotox_ascii
     outs:
-      - data/ecotox_parquet
+      - brick
diff --git a/src/biobricks/ecotox.clj b/src/biobricks/ecotox.clj
@@ -49,7 +49,7 @@
       (write-parquet parquet-file rows))))
 
 (comment
-  (let [out (fs/path "data" "ecotox_parquet")]
+  (let [out (fs/path "brick")]
     (fs/delete-tree out)
     (build-parquet {:db "data/ecotox_ascii" :output (str out)}))
   )