Cloud

[tpietzsch]

Switch SpimData basePath from File to URI.

There is now a method XmlIoAbstractSpimData.load(Reader, URI) that can be used to load a SpimData object from a pre-constructed Reader (for example reading from S3). The URI is the URI of the XML and is used to construct the base path URI.

ImgLoader XmlIos get the base path URI, with the default implementation falling back to File base path, which is what is implemented everywhere. But XmlIos can now override

T fromXml( final Element elem, final URI basePathURI, AbstractSequenceDescription< ?, ?, ? > sequenceDescription )

and construct relative paths that point to S3 etc.