Merge pull request #70 from bigbio/dev

ENTRAPMENT -> ENTRAP

README.md

@@ -245,7 +245,7 @@ Wang H, Dai C, Pfeuffer J, Sachsenberg T, Sanchez A, Bai M, Perez-Riverol Y. Tis
 
 ### Credits 
 
-- Julianus Pfeuffer
-- Yasset Perez-Riverol
-- Hong Wang
-- Ping Zheng
+- [Julianus Pfeuffer](@jpfeuffer)
+- [Yasset Perez-Riverol](@ypriverol)
+- [Hong Wang](@WangHong007)
+- [Ping Zheng](@zprobot) 

ibaqpy/ibaq/peptide_normalization.py

@@ -143,7 +143,7 @@ def remove_contaminants_entrapments_decoys(
     """
     contaminants = []
     contaminants.append("CONTAMINANT")
-    contaminants.append("ENTRAPMENT")
+    contaminants.append("ENTRAP")
     contaminants.append("DECOY")
     cregex = "|".join(contaminants)
     return dataset[~dataset[protein_field].str.contains(cregex)]

ibaqpy/ibaqpyc.py

@@ -1,5 +1,4 @@
 import click
-
 from ibaqpy.commands.features2peptides import features2parquet
 from ibaqpy.commands.compute_tpa import tpa_compute
 from ibaqpy.commands.merge_condition_files import merge_condition_generation
@@ -9,7 +8,6 @@
 
 CONTEXT_SETTINGS = dict(help_option_names=["-h", "--help"])
 
-
 @click.group(context_settings=CONTEXT_SETTINGS)
 @click.version_option(
     version=__init__.__version__,