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remove other information.
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ypriverol committed Jun 3, 2024
1 parent 6ba4d67 commit 715a4b8
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16 changes: 16 additions & 0 deletions ibaqpy/ibaq/peptide_normalization.py
Original file line number Diff line number Diff line change
Expand Up @@ -533,6 +533,22 @@ def peptide_normalization(
log2: bool,
save_parquet: bool,
) -> None:
"""
:param parquet: Parquet file with features
:param sdrf: SDRF file
:param min_aa: Min amino acids
:param min_unique: Min of unique peptides
:param remove_ids: Remove features for the given proteins
:param remove_decoy_contaminants: Remove contaminants and entrapment
:param remove_low_frequency_peptides: Remove low frecuency peptides
:param output: Output file
:param skip_normalization: Skip normalization
:param nmethod: normalization method for features
:param pnmethod: peptide normalization method
:param log2: log intensities for features before normalizing
:param save_parquet: Save to parque file.
"""
if os.path.exists(output):
raise FileExistsError("The output file already exists.")

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