Merge pull request #66 from zprobot/master

update: benchmark
bigbio · Jun 10, 2024 · 332c128 · 332c128
2 parents 946c7fe + 51a1948
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diff --git a/benchmarks/README.md b/benchmarks/README.md
@@ -102,6 +102,17 @@ The following boxplot shows the coefficient of variation for the 11 samples for
     <img src='images/PXD007683-TMTvsLFQ-boxplot.png' style="flex:1;height:600px;" />
 </center>
 
+#### Correlation between Ibaq and MaxQuant(Ibaq)
+
+For `PXD007683-LFQ`, we will normalize the MaxQuant Ibaq values of the proteins by dividing it by the total sum of that sample. Then compare the correlation between the log values of it and the log values of IbaqNorm.
+
+<div style="display:flex;justify-content:center">
+    <img src='images/PXD007683-LFQ-ibaq-vs-maxquant-density.png' style="heigit:600px;" />
+</div>
+<div style="display:flex;justify-content:center">
+    <img src='images/PXD007683-LFQ-11samples-ibaq-vs-maxquant-density.png' style="height:1200px;" />
+</div>
+
 #### LFQ missing values 
 
 Number of peptides missing in LFQ experiments.

diff --git a/benchmarks/images/PXD007683-LFQ-11samples-ibaq-vs-maxquant-density.png b/benchmarks/images/PXD007683-LFQ-11samples-ibaq-vs-maxquant-density.png
diff --git a/benchmarks/images/PXD007683-LFQ-ibaq-vs-maxquant-density.png b/benchmarks/images/PXD007683-LFQ-ibaq-vs-maxquant-density.png