- Cambridge, MA
- https://orcid.org/0000-0003-0981-9605
- @benf549.bsky.social
Highlights
- Pro
Pinned Loading
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boltz-generalized-covalent-modification
boltz-generalized-covalent-modification PublicAllows using Boltz to predict the structure of arbitrary covalent modifications / Non-Canonical Amino Acids. Covalent bonds are enforced. Also walks you through injecting a new residue into the CCD.
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calc_symmetry_aware_rmsd.py
calc_symmetry_aware_rmsd.py 1import io
2import os
3from pathlib import Path
4from rdkit import Chem
5from rdkit.Chem import AllChem
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REINFORCEmers
REINFORCEmers PublicFinal Project for Harvard CS184: Introduction to Reinforcement Learning
Python 1
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Graduate-School-Faculty-Ranker
Graduate-School-Faculty-Ranker PublicWebscraper for sorting potential graduate school program's faculty lists by common interests in the areas of computational protein and drug design
Jupyter Notebook
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Machine-Learning-Fundamentals
Machine-Learning-Fundamentals PublicA collection of Machine Learning models implemented from math to model in jupyter notebook.
Jupyter Notebook 2
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neovim-config
neovim-config PublicNeovim configuration featuring nerdtree, lightline, nerdcomments, autocompletion and snippets, catppuccin colorscheme, and sensible defaults
Vim Script 1
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