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Merge branch 'master' of github.com:bcn-medtech/reImagineClient
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mrceresa committed May 9, 2023
2 parents 892b77b + 6144686 commit 643a8da
Showing 1 changed file with 13 additions and 13 deletions.
26 changes: 13 additions & 13 deletions scripts/deiden/src/deidTest_pyd.py
Original file line number Diff line number Diff line change
Expand Up @@ -127,16 +127,16 @@ def _find_or_create_anoncode(image, db, fields):

return p, image

def save_new_images_data(images):
data = []
for image in images:
data.append( {
"imageId": image.imageId,
"anoncode": image.patient.anoncode
})
file_path = os.path.join(os.path.abspath(os.sep), 'tmp', 'anoncode_and_accessionNumber.json')
with open(file_path, 'w') as f:
json.dump(data, f)
# def save_new_images_data(images):
# data = []
# for image in images:
# data.append( {
# "imageId": image.imageId,
# "anoncode": image.patient.anoncode
# })
# file_path = os.path.join(os.path.abspath(os.sep), 'tmp', 'anoncode_and_accessionNumber.json')
# with open(file_path, 'w') as f:
# json.dump(data, f)

def main(args):
patients = LocalDB(verbose=False, sqlfile=args.db_location)
Expand Down Expand Up @@ -177,15 +177,15 @@ def main(args):
_saveHeaders(dicom_files, hdirpre)

updated_ids = dict()
new_images = []
# new_images = []
for image, fields in ids.items():
p, im = _find_or_create_anoncode(image, patients, fields)
fields['entity_id'] = p.anoncode
updated_ids[image] = fields

new_images.append(im)
# new_images.append(im)

save_new_images_data(new_images)
# save_new_images_data(new_images)
cleaned_files = replace_identifiers(dicom_files=dicom_files,
deid=recipe,
ids=updated_ids,
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