A framework to collectively develop multi-omic deconvolution methods.
The framework contains several blocks
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pre-processing : takes as input a multimodal .txt.gz, outputs a multimodal txt.gz
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feature_selection : takes as input a multimodal .txt.gz, outputs a multimodal txt.gz
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deconvolution : takes as input a multimodal mix.txt.gz and a ref.txt.gz, output a prediction.txt.gz
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early_int : takes as input a multimodal mix.txt.gz and a ref.txt.gz, outputs an integrated mix.txt.gz and a ref.txt.gz
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late_int : takes as input a a multimodal prediction.txt.gz, outputs an integrated prediction
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intermediate_int : takes as input a multimodal mix.txt.gz and a ref.txt.gz, outputs an integrated prediction
To run the demo, execute
mkdir 00_demo_data
#then copy in it starting_kit_phase2-3/data