sundry

DESCRIPTION

@@ -61,7 +61,7 @@ Collate:
     'distcalc.R'
     'utils.R'
     'feature_rsa_model.R'
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2.9000
 Suggests:
     testthat,
     covr,

NAMESPACE

@@ -10,8 +10,10 @@ S3method(crossval_samples,twofold_blocked_cross_validation)
 S3method(data_sample,mvpa_dataset)
 S3method(get_samples,mvpa_dataset)
 S3method(get_samples,mvpa_surface_dataset)
-S3method(get_searchlight,mvpa_dataset)
+S3method(get_searchlight,mvpa_image_dataset)
 S3method(get_searchlight,mvpa_surface_dataset)
+S3method(has_crossval,default)
+S3method(has_crossval,mvpa_model)
 S3method(has_test_set,mvpa_dataset)
 S3method(has_test_set,mvpa_design)
 S3method(has_test_set,mvpa_model)
@@ -33,38 +35,48 @@ S3method(performance,binary_classification_result)
 S3method(performance,multiway_classification_result)
 S3method(performance,regression_result)
 S3method(predict,list_model)
-S3method(predict,regression_model_fit)
 S3method(predict,weighted_model)
+S3method(print,binary_classification_result)
 S3method(print,blocked_cross_validation)
 S3method(print,bootstrap_blocked_cross_validation)
+S3method(print,classification_result)
 S3method(print,data_sample)
+S3method(print,feature_rsa_model)
 S3method(print,kfold_cross_validation)
+S3method(print,manova_design)
+S3method(print,manova_model)
+S3method(print,multiway_classification_result)
+S3method(print,mvpa_dataset)
 S3method(print,mvpa_design)
 S3method(print,mvpa_model)
 S3method(print,mvpa_surface_dataset)
+S3method(print,regression_result)
 S3method(print,rsa_design)
+S3method(print,rsa_model)
+S3method(print,searchlight_performance)
+S3method(print,searchlight_result)
 S3method(print,twofold_blocked_cross_validation)
-S3method(print,twofold_cross_validation)
 S3method(prob_observed,binary_classification_result)
 S3method(prob_observed,multiway_classification_result)
 S3method(run_regional,mvpa_model)
 S3method(run_regional,rsa_model)
-S3method(run_searchlight,manova_model)
-S3method(run_searchlight,mvpa_model)
-S3method(run_searchlight,rsa_model)
+S3method(run_searchlight,model_spec)
 S3method(run_searchlight,vector_rsa)
 S3method(select_features,FTest)
 S3method(select_features,catscore)
 S3method(select_features,mvpa_model)
 S3method(sub_result,binary_classification_result)
 S3method(sub_result,multiway_classification_result)
+S3method(summary,feature_rsa_model)
 S3method(test_design,mvpa_design)
+S3method(train_model,rsa_model)
 S3method(train_model,vector_rsa_model)
 S3method(tune_grid,mvpa_model)
 S3method(y_test,mvpa_design)
 S3method(y_test,mvpa_model)
 S3method(y_train,mvpa_design)
 S3method(y_train,mvpa_model)
+export(MVPAModels)
 export(binary_classification_result)
 export(blocked_cross_validation)
 export(bootstrap_blocked_cross_validation)
@@ -73,15 +85,19 @@ export(combine_prediction_tables)
 export(compute_performance)
 export(cordist)
 export(create_dist)
+export(create_model_spec)
 export(crossv_block)
 export(crossv_k)
 export(crossval_samples)
 export(custom_cross_validation)
 export(custom_performance)
 export(data_sample)
-export(external_crossval)
+export(evaluate_model.feature_rsa_model)
+export(feature_rsa_design)
+export(feature_rsa_model)
 export(feature_selector)
 export(fit_model)
+export(format_result)
 export(gen_sample_dataset)
 export(get_samples)
 export(get_searchlight)
@@ -91,8 +107,8 @@ export(kfold_cross_validation)
 export(list_model)
 export(load_model)
 export(manova_design)
-export(manova_iterate)
 export(manova_model)
+export(merge_classif_results)
 export(merge_predictions)
 export(merge_results)
 export(mvpa_dataset)
@@ -102,14 +118,13 @@ export(mvpa_model)
 export(mvpa_surface_dataset)
 export(nobs)
 export(nresponses)
-export(pairwise_dist)
 export(performance)
+export(predict_model.feature_rsa_model)
 export(predicted_class)
 export(prep_regional)
 export(prob_observed)
 export(regional_mvpa_result)
 export(rsa_design)
-export(rsa_iterate)
 export(rsa_model)
 export(run_regional)
 export(run_searchlight)
@@ -118,14 +133,14 @@ export(select_features)
 export(sequential_blocked_cross_validation)
 export(sub_result)
 export(test_design)
+export(train_model)
 export(twofold_blocked_cross_validation)
 export(vector_rsa_design)
 export(vector_rsa_model)
 export(y_test)
 export(y_train)
 import(doParallel)
 import(dplyr)
-import(ffmanova)
 import(foreach)
 import(itertools)
 import(parallel)
@@ -138,17 +153,18 @@ importFrom(dplyr,bind_rows)
 importFrom(dplyr,do)
 importFrom(dplyr,filter)
 importFrom(dplyr,rowwise)
+importFrom(ffmanova,ffmanova)
 importFrom(furrr,future_map)
 importFrom(furrr,future_pmap)
 importFrom(futile.logger,flog.debug)
 importFrom(futile.logger,flog.error)
 importFrom(futile.logger,flog.info)
-importFrom(futile.logger,flog.warn)
 importFrom(io,qread)
 importFrom(memoise,memoise)
 importFrom(methods,as)
 importFrom(modelr,resample)
 importFrom(neuroim2,NeuroVol)
+importFrom(neuroim2,ROIVec)
 importFrom(neuroim2,SparseNeuroVec)
 importFrom(neuroim2,coords)
 importFrom(neuroim2,indices)
@@ -163,6 +179,7 @@ importFrom(neuroim2,values)
 importFrom(neuroim2,vectors)
 importFrom(neuroim2,vols)
 importFrom(neurosurf,NeuroSurface)
+importFrom(neurosurf,ROISurfaceVector)
 importFrom(neurosurf,geometry)
 importFrom(neurosurf,nodes)
 importFrom(purrr,is_formula)