trying to pass Rcmd Check

baynec2 · Jun 7, 2024 · 8ed17a6 · 8ed17a6
1 parent ae3b982
commit 8ed17a6
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Showing 16 changed files with 4 additions and 10,677 deletions.
diff --git a/R/plot_cleavages_per_pos.R b/R/plot_cleavages_per_pos.R
@@ -29,8 +29,8 @@ plot_cleavages_per_pos = function(count_of_cleavages,
     ggplot2::scale_x_continuous(breaks = seq(0, 13))
 
   if(facets == "grid"){
-    p2 = p1 + ggplot2::facet_grid(rows = vars(condition),
-                                  cols = vars(time)) 
+    p2 = p1 + ggplot2::facet_grid(rows = dplyr::vars(condition),
+                                  cols = dplyr::vars(time)) 
   } else if (facets == "wrap"){
     p2 = p1 + ggplot2::facet_wrap(~condition + time,
                                   ncol = ncol,

diff --git a/R/plot_volcano.R b/R/plot_volcano.R
@@ -41,8 +41,8 @@ plot_volcano <- function(log2fc_t_test_data,
     ) +
     ggplot2::labs(x = "Log2 (Time TX/T0)", y = "-log10(p.adj value)") 
   if(facets == "grid"){
-    p2 = p1 + ggplot2::facet_grid(rows = vars(condition),
-                                  cols = vars(time)) 
+    p2 = p1 + ggplot2::facet_grid(rows = dplyr::vars(condition),
+                                  cols = dplyr::vars(time)) 
   } else if (facets == "wrap"){
     p2 = p1 + ggplot2::facet_wrap(~condition + time,
                                   ncol = ncol) 

diff --git a/...templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/CycLoess-normalized.txt b/...templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/CycLoess-normalized.txt
diff --git a/...kdown/templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/GI-normalized.txt b/...kdown/templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/GI-normalized.txt
diff --git a/...leton/2024-06-07_mspms_normalyze_output/Norm-report-2024-06-07_mspms_normalyze_output.pdf b/...leton/2024-06-07_mspms_normalyze_output/Norm-report-2024-06-07_mspms_normalyze_output.pdf
diff --git a/...templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/Quantile-normalized.txt b/...templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/Quantile-normalized.txt
diff --git a/...down/templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/RLR-normalized.txt b/...down/templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/RLR-normalized.txt
diff --git a/...templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/RT-Loess-normalized.txt b/...templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/RT-Loess-normalized.txt
diff --git a/...n/templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/RT-VSN-normalized.txt b/...n/templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/RT-VSN-normalized.txt
diff --git a/.../templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/RT-mean-normalized.txt b/.../templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/RT-mean-normalized.txt
diff --git a/...emplates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/RT-median-normalized.txt b/...emplates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/RT-median-normalized.txt
diff --git a/...down/templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/VSN-normalized.txt b/...down/templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/VSN-normalized.txt
diff --git a/...own/templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/log2-normalized.txt b/...own/templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/log2-normalized.txt
diff --git a/...own/templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/mean-normalized.txt b/...own/templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/mean-normalized.txt
diff --git a/...n/templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/median-normalized.txt b/...n/templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/median-normalized.txt
diff --git a/...n/templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/submitted_rawdata.txt b/...n/templates/mspms_report/skeleton/2024-06-07_mspms_normalyze_output/submitted_rawdata.txt