Merge branch 'develop'

baynec2 · Jun 4, 2024 · 24c53a2 · 24c53a2
2 parents 5523768 + 09211ad
commit 24c53a2
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diff --git a/man/plot_all_icelogos.Rd b/man/plot_all_icelogos.Rd
diff --git a/vignettes/mspms_analysis.Rmd b/vignettes/mspms_analysis.Rmd
@@ -204,7 +204,6 @@ mspms uses the NormalyzerDE package to do normalization under the hood.
 
 We can normalyze the data as follows:  
 ```{r,eval = FALSE}
-#normalyze writes files to disk, which is a problem for the vignette
 normalyzed_data <- normalyze(peaks_prepared_data, design_matrix)
 ```
 
@@ -216,9 +215,6 @@ need to specify the design matrix here too. Make sure that the column header
 names are "sample" and "group" just like before.
 
 ```{r}
-#normalyze writes files to disk, which is a problem for the vignette
-#Getting around by retrieving equivalent data from package. 
-normalyzed_data <- mspms::normalyzed_data
 outliers <- handle_outliers(normalyzed_data, design_matrix)
 ```