SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. Our library applies a unique generic design that guarantees high performance, generality, extensibility, and integration with other libraries. SeqAn is easy to use and simplifies the development of new software tools with a minimal loss of performance.
The SeqAn library itself, the tests and demos are licensed under the very permissing 3-clause BSD License. The licenses for the applications themselves can be found in the LICENSE files.
- Visual C++ 8, 9, 10, 11
- MinGW
- LLVM >= 3.0
- GCC >= 4.1
- Supported C++ compiler
- CMake (http://cmake.org/)
Assuming that you have checked out the repository already, all prerequisites are installed and you are on Linux or Mac Os X.
# mkdir build/Debug # cd build/Debug # cmake ../.. -DCMAKE_BUILD_TYPE=Debug # make test_basic # ./core/tests/basic/test_basic ... the tests for module basic will run ...