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daniel-rijsketic committed Jul 20, 2024
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Expand Up @@ -366,11 +366,11 @@ <h1>Source code for unravel.cluster_stats.mean_IF_summary</h1><div class="highli
<span class="sd"> - The first word of the csv inputs is used for the the group names (underscore separated).</span>

<span class="sd">Inputs: </span>
<span class="sd"> - All csv files in the working dir with these columns: ``Cluster_ID``, ``Mean_IF_Intensity``</span>
<span class="sd"> - &lt;asterisk&gt;.csv files in the working dir with these columns: Cluster_ID, Mean_IF_Intensity</span>

<span class="sd">Prereqs:</span>
<span class="sd"> - Generate CSV inputs withs ``cluster_IF_mean``</span>
<span class="sd"> - Add conditions to input CSV file names: ``utils_prepend -sk $SAMPLE_KEY -f</span>
<span class="sd"> - Add conditions to input CSV file names: ``utils_prepend`` -sk $SAMPLE_KEY -f</span>

<span class="sd">Outputs:</span>
<span class="sd"> - cluster_mean_IF_summary/cluster_&lt;cluster_id&gt;.pdf for each cluster</span>
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2 changes: 1 addition & 1 deletion unravel/docs/_build/html/searchindex.js

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Expand Up @@ -512,12 +512,12 @@ <h2>Usage for Tukey’s tests w/ reordering and renaming of conditions:<a class=
</div>
<dl class="simple">
<dt>Inputs:</dt><dd><ul class="simple">
<li><p>All csv files in the working dir with these columns: <code class="docutils literal notranslate"><span class="pre">Cluster_ID</span></code>, <code class="docutils literal notranslate"><span class="pre">Mean_IF_Intensity</span></code></p></li>
<li><p>&lt;asterisk&gt;.csv files in the working dir with these columns: Cluster_ID, Mean_IF_Intensity</p></li>
</ul>
</dd>
<dt>Prereqs:</dt><dd><ul class="simple">
<li><p>Generate CSV inputs withs <code class="docutils literal notranslate"><span class="pre">cluster_IF_mean</span></code></p></li>
<li><p>Add conditions to input CSV file names: <a href="#id1"><span class="problematic" id="id2">``</span></a>utils_prepend -sk $SAMPLE_KEY -f</p></li>
<li><p>Add conditions to input CSV file names: <code class="docutils literal notranslate"><span class="pre">utils_prepend</span></code> -sk $SAMPLE_KEY -f</p></li>
</ul>
</dd>
<dt>Outputs:</dt><dd><ul class="simple">
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