Add PC loadings plot to appendix #55

athowes · Jul 4, 2023 · 77c4d59 · 77c4d59
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Showing 4 changed files with 9 additions and 4 deletions.
diff --git a/docs/appendix.pdf b/docs/appendix.pdf
diff --git a/docs/paper.pdf b/docs/paper.pdf
diff --git a/src/docs_paper/appendix.Rmd b/src/docs_paper/appendix.Rmd
@@ -496,11 +496,15 @@ knitr::include_graphics("depends/nodes-quantiles-sd.png")
 ```
 
 ```{r scree, fig.cap="Most variation could be explained by far fewer than the full 24 dimensions."}
-knitr::include_graphics("depends/tv-plot.png")
+knitr::include_graphics("depends/total-variation.png")
+```
+
+```{r pc-loadings, fig.cap="Principal component loadings."}
+knitr::include_graphics("depends/pc-loadings.png")
 ```
 
 ```{r reduced-rank, fig.cap="The reduced rank (8) matrix approximation to the Hessian is visually similar to the full rank matrix."}
-knitr::include_graphics("depends/reduced-rank-plot.png")
+knitr::include_graphics("depends/reduced-rank.png")
 ```
 
 ## Estimated normalising constant comparison

diff --git a/src/docs_paper/orderly.yml b/src/docs_paper/orderly.yml
@@ -81,5 +81,6 @@ depends:
       id: latest
       use:
         depends/marginal-sd.png: marginal-sd.png
-        depends/reduced-rank-plot.png: reduced-rank-plot.png
-        depends/tv-plot.png: tv-plot.png
+        depends/reduced-rank.png: reduced-rank.png
+        depends/total-variation.png: total-variation.png
+        depends/pc-loadings.png: pc-loadings.png