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Clinica v0.5.3 Bugfixes

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@omar-rifai omar-rifai released this 25 Nov 14:16
· 611 commits to dev since this release
a1ec2cc

Added

  • [t1-freesurfer] Add option to t1-freesurfer to project the results of recon-all onto another atlas
  • [CI] Use poetry for dependency management

Changed

  • [CI] Refactor non-regression tests for easier parallelization
  • [Atlas] Update checksum to make pipelines compatible with fsl 6.0.5

Fixed

  • [t1-volume*/pet*] Add command line argument yes for turning interactivity off
  • [`t1-volume-existing-template] Fix chained invocation
  • [t1-volume*/pet-volume*] Fix default value of --smooth` parameter for click compatibility
  • [dwi-connectome] Set --n_tracks's type for click compatibility
  • [dwi-preprocessing*] Change type of initrand and use_cuda to bool
  • [t1-freesurfer-longitudinal] Fix broken pipeline due to typo in code
  • [Documentation] Update OASIS3_to_bids instructions for conversion
  • [StatisticsSurface] Fix type in covariate argument
  • [StatisticsVolume] Fix bug in feature argument