Viz trajectories

[JCharline]

Patient trajectories vizualisation

Description

PR addressing issue #30.

Function to plot individual event sequences. Events can be one-time/continuous, categorized in event families or relative from an index date.

Vizualisation parameters are also accepted, such as event colors, labels, and figure parameters.

Checklist

• If this PR is a bug fix, the bug is documented in the test suite.
• Changes were documented in the changelog (pending section).
• If necessary, changes were made to the documentation (eg new pipeline).

[Thomzoy]

Hi @JCharline !
Thanks a lot for this PR, it looks great !
Could you maybe rebase and run pre-commit so that the CI is passing ?

pre-commit install
pre-commit run --all-files

[Vincent-Maladiere]

Hey @JCharline, thanks for the PR! Here is the first round of reviews.
Please format your code using pre-commit like @Thomzoy mentioned to pass the tests.

[codecov-commenter]

Codecov Report

❗ No coverage uploaded for pull request base (main@2e4c960). Click here to learn what that means.
Patch coverage: 100.00% of modified lines in pull request are covered.

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Additional details and impacted files

@@           Coverage Diff           @@
##             main      #41   +/-   ##
=======================================
  Coverage        ?   83.80%           
=======================================
  Files           ?       82           
  Lines           ?     2488           
  Branches        ?        0           
=======================================
  Hits            ?     2085           
  Misses          ?      403           
  Partials        ?        0           

Impacted Files	Coverage Δ
eds_scikit/datasets/__init__.py	81.48% <100.00%> (ø)
eds_scikit/datasets/synthetic/event_sequences.py	100.00% <100.00%> (ø)
eds_scikit/plot/event_sequences.py	100.00% <100.00%> (ø)

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[Vincent-Maladiere]

Hi @JCharline, here is probably the last review before merging :)

[Vincent-Maladiere]

Thank you for this PR @JCharline, LGTM :)

[JCharline]

Thanks @Vincent-Maladiere for the review ! Happy to merge 🥳

[Thomzoy]

Very nice PR, thanks @JCharline for the feature and @Vincent-Maladiere for the review ;)
One last thing, could you rebase main and add your contribution to the changelog ?

[JCharline]

Thanks @Thomzoy, it should be okay by now !