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Releases: apcamargo/RNAsamba

0.2.5

06 Apr 00:14
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  • Fix a dependency conflict between keras and h5py.

0.2.4

23 Jan 18:23
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  • Sequences shorter than 4 nucleotides would break the program in the k-mer frequency step (as RNAsamba uses 2, 3 and 4-mers). Now, those sequences are ignored.

0.2.3

22 Nov 19:52
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  • The input FASTA file is now read only once.
  • Several unnecessary loops were removed.

0.2.2

21 Nov 05:12
65be448
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  • The longest_orf function is now written in Rust and is ~50 times faster.
  • The ORF extraction step is now parallelized.

0.2.1

20 Nov 23:43
dbd3771
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  • The k-mer frequency function is now written in Rust and is parallelized.

0.2.0

21 Oct 03:44
6631c37
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  • The count_kmers function is now written in Rust and is approximately 5.5× faster than the old native Python implementation.

0.1.6

02 Oct 21:25
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  • Class and function names in the miniigloo module were improved.
  • Updated Keras version requirements.

0.1.5

22 Sep 00:04
4bb892e
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  • CLI now uses subparsers for the classification and training modules.
  • Changed version requirements for numpy (<1.17) to avoid unnecessary warnings.
  • Disabled Tensorflow's excessive logging and warnings.
  • Step number is now shown.

0.1.4

29 Aug 19:25
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  • Replace U with T in nucleotide sequences.

0.1.2

25 Jun 19:23
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  • Set the minimal Python version to 3.6
  • Add the partial-length weights file
  • Remove tf.logging.set_verbosity(tf.logging.ERROR), which was causing warnings in TensorFlow 1.14