Automated Tests for Galaxy on Kubernetes Stacks

Galaxy on GKE deployed via GalaxyKubeMan (AnVIL)

Deployment Testing

Twice a day, GalaxyKubeMan (GKM) is deployed on GKE, mimicking an AnVIL deployment. The purpose of these tests is to provide reasonable confidence that Galaxy is launchable on the AnVIL everyday.

Below is a plot summarizing successful deployments and GKM install times. Click here or on the image for more details.

Tool Testing

After each successful deployment, automated tool tests are also run against the instance. These serve as an end-to-end-like test for Galaxy, providing confidence that Galaxy is not only launchable but functional. These tests cycle on a weekly basis through the entire suite of tools installed by default on AnVIL, providing reasonable confidence that the tools encountered by most users remain functional, and automating the detection and reporting of tools breaking.

Latest tool tests for each chunk:

Chunk ID	Tool List	Latest report	Previous report
0	Toolset	Mon Sep 15 00:58:38 2025	Mon Sep 08 00:58:52 2025
1	Toolset	Mon Sep 15 12:59:03 2025	Mon Sep 08 13:03:16 2025
2	Toolset	Tue Sep 16 00:55:02 2025	Tue Sep 09 00:55:51 2025
3	Toolset	Tue Sep 16 12:58:26 2025	Tue Sep 09 13:00:49 2025
4	Toolset	Wed Sep 17 00:55:52 2025	Wed Sep 10 00:54:52 2025
5	Toolset	Wed Sep 17 13:00:18 2025	Wed Sep 10 12:58:32 2025
6	Toolset	Thu Sep 11 00:55:05 2025	Thu Sep 04 00:54:13 2025
7	Toolset	Thu Sep 11 12:58:14 2025	Thu Sep 04 12:54:53 2025
8	Toolset	Fri Sep 12 00:54:10 2025	Fri Sep 05 00:54:52 2025
9	Toolset	Fri Sep 12 12:57:06 2025	Fri Sep 05 12:57:04 2025
10	Toolset	Sat Sep 13 00:52:02 2025	Sat Sep 06 00:54:03 2025
11	Toolset	Sat Sep 13 12:53:58 2025	Sat Sep 06 12:52:30 2025
12	Toolset	Sun Sep 14 00:58:39 2025	Sun Sep 07 01:00:15 2025
13	Toolset	Sun Sep 14 12:53:29 2025	Sun Sep 07 12:52:59 2025