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@antigenomics

AntigenOmics

Mining antigen and antigen receptor repertoires. Immune repertoire biomarker databases and software tools.

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  1. vdjdb-db Public

    🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!

    Groovy 138 26

  2. vdjmatch Public

    ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities

    Groovy 38 7

  3. vdjviz Public

    ⚙️ A lightweight immune repertoire browser

    JavaScript 27 10

  4. repseq-annotation-tutorial Public

    📝 [Tutorial] RepSeq data mining basics in R

    TeX 10 7

  5. tcr-annotation-methodology Public

    📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery

    TeX 13 4

  6. tcren-ms Public

    📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential

    Parrot 18 4

Repositories

Showing 10 of 56 repositories
  • vdjdb-db Public

    🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!

    Groovy 138 26 80 0 Updated Jul 28, 2025
  • tcrenc Public

    TCR sequence (auto)encoders

    HTML 0 0 0 0 Updated Jul 26, 2025
  • vdjdb-db-validation Public

    📝 [Commentary] Infographics for VDJdb records validation

    HTML 0 0 0 0 Updated Jul 25, 2025
  • mirpy Public

    Python library and snippets for AIRR-seq data analysis, based on our in-house scripts

    Jupyter Notebook 1 GPL-3.0 3 0 0 Updated Jul 18, 2025
  • tcremp Public Forked from yuliajk/tcremp

    T-cell receptor sequence embedding via prototypes

    Jupyter Notebook 5 GPL-3.0 1 1 0 Updated Jul 18, 2025
  • vdjdb-web Public

    Interactive browser for the VDJdb database

    HTML 14 Apache-2.0 1 9 3 Updated May 29, 2025
  • tcren-ms Public

    📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential

    Parrot 18 4 1 0 Updated Mar 28, 2025
  • tcr-covid-classifier Public

    TCR motifs associated with infectious conditions and HLAs

    Jupyter Notebook 0 0 0 0 Updated Mar 27, 2025
  • vdjbet Public

    ⚙️ VDJ biomarker enrichment test

    HTML 0 0 0 0 Updated Mar 17, 2025
  • antigenomics.github.io Public

    🌐 Immuno Sequencing Algorithms Group web page

    JavaScript 0 CC-BY-4.0 0 0 0 Updated Jul 22, 2024