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Implement new JSON standard for MIBIScope Update #459

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What is the purpose of this PR?

Due to MIBIScope updates, a few breaking changes will be introduced within the next month for run files. This will require changes to the extraction pipeline.

How did you implement your changes

  1. The fovs key is now enclosed in an rois key. I'm still talking with Sean from Ionpath to see if this list will always be length one for our purposes, or if there will ever be a case where it can be > 1.
  2. FOV nums that are less than 10 are prefixed with an additional "0".

Remaining issues

There may be ongoing updates. Testing will need to be thorough.

@alex-l-kong alex-l-kong marked this pull request as draft February 29, 2024 19:56
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